Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01219 ATGGCTTCCATCACAAAACAAAACATTAATTTCTCCAAATTCCAACTTCAAAGCTGGTTTTTTTCCAATACCAAATTCACAAAATCTCTTCACTTTCTCAATTTGGTATACAAAAATCCCTCAATCTTCAAACCCTCTTATTTGGAGCATCTCAACAAAACTCAACTCATCTTCTTCTCTCGTCATAACCCAAAAAGGTTTAGAAAACTTGTTCTTGATGATGATGGAAATTTAAGAATTTATAGTTTTTATCCTGAACAAAACAACACATGGGTTGTTGTTTGGTTAGGAATTTGGGAAATGTGTAAAGTCAAAGGAAAATGTGGACCTAATTCAATTTGTATGCCAAGAGAAGATTTTTATAATTCAACTTTTTGTGTTTGTCCTTCTGGATTTGAGCCTGTTGAAGGTGGAACTGAAAAGGGTTGCAAAAGAAAAATTCCGATTTCGAGTAATAGTAATACTCATTTTGTTAGGCTTGATTATGTGAACTATACTAGTGGTTCTATGAATCAAATCAATGCTTCAAACTATACAATTTGTGAATCGAATTGTACAAGAGATTCGAGTTGTCTTGGATTTGGATTCAAATACGATGGATCGGGTTATTGTGTTTTGTTACGAGGAAAACAGCTTCAATATGGTTATTGGTCGCCGGGGACTGAACTTGCTTTGTTTTTGAGACTTGATCAAAAGGAATCCGAGGCTTCTAATTTCATTGGTATGACAGAAGTTATGCAAACAACTTGTCCGGTTAGGATAAGTTTGCCTTTACCGCCGAAGGATTCGAACACTACCACTAGAAATATTGTGATTATTTGCACGCTTTTCGCGGCTGAACTTATTGCTGGTGTGGCGTTCTTTTGGTCTTTTCTTAAGAGGTATATCAAGTATAGGGACATGGCTACCACGTTGGGGCTTGAGCTTTTACCTGCAGGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCTACTAATGATTTCTCGAATCTTATTGGGAAAGGTGGATTTGGAGATGTTTACAAAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGTTATTGGAGCTTGTCAGTGGAGTGAGAAACTTCGAGATTCAAGGATCTGTGGCGAGGAGTGACGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAAATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAGGGCACATTTTCAGTTGGTTAATAGAATGGTGAAGACTGCTATGTGGTGTTTGCAGGATAGACCTGAGTCAAGGCCAACAATGGGGAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGACCCTAAGAAACCAACTGTTTTCTTCCTTGGTGAAGAGTAG 1407 0.3781 MASITKQNINFSKFQLQSWFFSNTKFTKSLHFLNLVYKNPSIFKPSYLEHLNKTQLIFFSRHNPKRFRKLVLDDDGNLRIYSFYPEQNNTWVVVWLGIWEMCKVKGKCGPNSICMPREDFYNSTFCVCPSGFEPVEGGTEKGCKRKIPISSNSNTHFVRLDYVNYTSGSMNQINASNYTICESNCTRDSSCLGFGFKYDGSGYCVLLRGKQLQYGYWSPGTELALFLRLDQKESEASNFIGMTEVMQTTCPVRISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSRAHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01219 468 Gene3D Phosphorylase Kinase; domain 1 307 350 - -
Trre2g01219 468 ProSiteProfiles PAN/Apple domain profile. 143 230 IPR003609 -
Trre2g01219 468 Pfam S-locus glycoprotein domain 41 135 IPR000858 GO:0048544
Trre2g01219 468 SUPERFAMILY Protein kinase-like (PK-like) 347 448 IPR011009 -
Trre2g01219 468 PANTHER OS07G0415500 PROTEIN 21 345 - -
Trre2g01219 468 Pfam Protein tyrosine and serine/threonine kinase 345 446 IPR001245 GO:0004672|GO:0006468
Trre2g01219 468 Gene3D Transferase(Phosphotransferase) domain 1 351 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01219 Trre-Chr2 9800855 9803138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01219 348 460 Receptor kinase-like Gene Family AT4G18250 32.174 3.89e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre2g01219 PK_Tyr_Ser-Thr 1.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01219 - - lang:109325652 483.796