Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01203 ATGATGTGTGTAGTTCTATCATTCTCCATTGCTACCATAGTCTCAAGGAGTGCTAATGCTTCACCTTCAATAATAGAATATCTTGCTGCCTTCCATACCAAATTCGAACAACCTCACCGGAAAACTCCTCAAAACTCCTCAAATTCACCTACGCAACACATCACCGACCACCGCTCCAATCACAAAGAGACTGTCAGGAAGAGGAGTGAGATGGAAGGTGGAGATCCAACTGCTGCTAGAAAAGTTCAGAAGGCGGACCGTGAGAAAATCAGGAGGGATCGGTTGAATGATAGTTTTCATGAATTGGGAACCACTTTAGATCCTGATAGACCACGGAACGACAAGGCAACCATCATGACGGAGACAATTCAAGTGCTAAAGGACATAACAGCTGAAGTTGATAGACTGAAAACAGAACAAAAATCAAATTCTGAAGAGGCACACGAACTAATACAAGAAAATAATGAACTCCGAGAAGAGACGGCATCTTTAAAATCCGATGTAGAAAATATTAATTCCCAGTATCAGCGGATGGTCAGAGTCAGAGTCATGCCACCATGGACTGCAATTGACCATTCTGTTATGATGAGTAGCCCTTATCCATATCCAGTTCCCATACCAATCCCGCCTGCACCAGTTTCCATTCACCCACCTCTGCAACCTTTTCCTTACTTTGTAAACCAAAATCCTGGTCATATTCCAAGTCTATGCTCAATGTATATTCCATTCTCAGCGCCGGCTAATCCCCCAGTTGAGATGCCATCAGCTCAGCATGCTTCTACATTCCACATGTTTAGTCGAAAAGAGTCTCAAAGAGAGTCACCGGGTCATAAAAGAAGACCTAGTGATGCAGACAGATGTAGTGTGTCTCCTGATGTAGCAACAGAACTTGAACTTAAGATGCCTGGATCATCCACACAACAGGATTGCACATCTAGAGGGAAAAAAGGCAAGCATTCGGTGATGAGTGATAGAATCATCATCGATGAGAGTGCCTCGAGTCAAGATTCTCCATCTCAGGGACTTCAAGATAGCTCCAACAGCATTGGCGACACTCCAAAGGCCGTTGATTGA 1074 0.4395 MMCVVLSFSIATIVSRSANASPSIIEYLAAFHTKFEQPHRKTPQNSSNSPTQHITDHRSNHKETVRKRSEMEGGDPTAARKVQKADREKIRRDRLNDSFHELGTTLDPDRPRNDKATIMTETIQVLKDITAEVDRLKTEQKSNSEEAHELIQENNELREETASLKSDVENINSQYQRMVRVRVMPPWTAIDHSVMMSSPYPYPVPIPIPPAPVSIHPPLQPFPYFVNQNPGHIPSLCSMYIPFSAPANPPVEMPSAQHASTFHMFSRKESQRESPGHKRRPSDADRCSVSPDVATELELKMPGSSTQQDCTSRGKKGKHSVMSDRIIIDESASSQDSPSQGLQDSSNSIGDTPKAVD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01203 357 PANTHER TRANSCRIPTION FACTOR BHLH121 39 354 IPR044579 GO:0003700|GO:0006879
Trre2g01203 357 MobiDBLite consensus disorder prediction 265 357 - -
Trre2g01203 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Trre2g01203 357 MobiDBLite consensus disorder prediction 265 286 - -
Trre2g01203 357 CDD bHLH_AtILR3_like 84 158 - -
Trre2g01203 357 MobiDBLite consensus disorder prediction 55 94 - -
Trre2g01203 357 Gene3D - 78 179 IPR036638 GO:0046983
Trre2g01203 357 MobiDBLite consensus disorder prediction 327 357 - -
Trre2g01203 357 SMART finulus 85 135 IPR011598 GO:0046983
Trre2g01203 357 Pfam Helix-loop-helix DNA-binding domain 80 128 IPR011598 GO:0046983
Trre2g01203 357 MobiDBLite consensus disorder prediction 37 94 - -
Trre2g01203 357 Coils Coil 119 174 - -
Trre2g01203 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 129 IPR011598 GO:0046983
Trre2g01203 357 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01203 Trre-Chr2 9721530 9725026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01203 77 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 47.347 1.52e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01203 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01203 - - cam:101509613 368.622