Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01197 ATGCCTGCTGCTGCGTCGTTGCAGAGAATGGAGCACTCAAGTATTAACTCCGGCGATTTTCCGGCCGGTTTAAGAGTTCTCGTTGTTGATGATGACGTCACTACCTTGAAGATAATTGAGCGAATGTCTGTTCGCTGCCATTATCGCGTCACTACATGCTCTGAGGCCACTGTTGCTTTAAAAATTCTGCGGGAAAGTAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTAGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTTATTAAGCCTGTACGGTTGGAAGAACTTAGGAATATATGGCAGCATGTTGCTAGGAAATTTTTGAATGAAAGTAAAGAACATGATAATTCTGGCAGCATAGAAGATAATGATCGCAATAAACGTGGGAATGATGATAACAATAACATTTCTTCTGCTGCTGGTGCAACAAAAGGAATAGTTAAAGAACAAAAAAAGAGAGGCAATTTAAAAGATGAAGAAGATGTTGAATTGGAGAATGACGATCCATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTTAGCGCTGTTAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCGAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAATGGAGTGGCACAACAACAGAATGAGATGCTAAACACAGTTCCTGGGAGTATAGAATCCAAACTAGCTGCTGCTGAAAGATACATACAAACTTTGGCTGCTTCTGGCTATGCTTCCCCTGAAACACTTGCAGCCCTTCATGCTGAACTCTTAGGTCACCCGGTAACTAACATAGTGCCTACAGTGGACAAGACTGCACTAATGCAAGCATCTGTACAGGAGCCAAACCACTCTGGTGCTGATGATCATCCTTCCAACATTGTCAATAATTTCCCCCAGTCCATCTTAAAAGTAGATGGTTCATTGTCAGGATATGGAGCATGGCCACCATCTAATACAGTCGGTTCAGTCTCAAGGGGAAGGTTAGGCATTCAGAATAATAACACGGTGGTTGATATATTGCAGCACCAACAAAAGCACCAGCATCAGCAAAAACAACAGCAGTTGCCGATACATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTAGTGGTTCCTGCTCAATCTTCTGACACTTTCCAGGAAGTAAAATCTGTTGCTTCAGTCAACAAGGATTGCAGTTTTGGCAGAAATGCCATTGTTGATTATAGTCAACAATCACAAAAATCAAATATTTCATCAAGTACATCTCAATATCTTGGCGGGGACACCAAATCTACCTCCATTTCTCCTCTAATGTCTTCTTTTTCAGTAGTCTCCAGCAATAACAATATTGATCAGATTCAAAACTCAACGTCGGCATTTGGTGCTGCGAGACCATTGCCCAGCCTTCTGCCCATGACATTTACACAAGTTTCATATGATATTAAATCCAGCGATTCACTTGATCAAGTCTGTCTTAGGAATCTTGGACTTGTTGGGAAAGGTAACTACATATCAAGTTTTGAAAAGGAAATTGAATCGTCTGCAAGTGATTTTAGTCATATGAAAGTATTTGTAGCTAGCAATGGTAACACAGTGAAGGAGGAACCGAAGGAGGAAACAAATTTGATCAGATATTCAAATGTGAACCACCCAGTTCTATAG 1836 0.4052 MPAAASLQRMEHSSINSGDFPAGLRVLVVDDDVTTLKIIERMSVRCHYRVTTCSEATVALKILRESKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNESKEHDNSGSIEDNDRNKRGNDDNNNISSAAGATKGIVKEQKKRGNLKDEEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNGVAQQQNEMLNTVPGSIESKLAAAERYIQTLAASGYASPETLAALHAELLGHPVTNIVPTVDKTALMQASVQEPNHSGADDHPSNIVNNFPQSILKVDGSLSGYGAWPPSNTVGSVSRGRLGIQNNNTVVDILQHQQKHQHQQKQQQLPIHDQNRSINVQPSCLVVPAQSSDTFQEVKSVASVNKDCSFGRNAIVDYSQQSQKSNISSSTSQYLGGDTKSTSISPLMSSFSVVSSNNNIDQIQNSTSAFGAARPLPSLLPMTFTQVSYDIKSSDSLDQVCLRNLGLVGKGNYISSFEKEIESSASDFSHMKVFVASNGNTVKEEPKEETNLIRYSNVNHPVL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01197 611 Gene3D - 21 146 - -
Trre2g01197 611 MobiDBLite consensus disorder prediction 182 196 - -
Trre2g01197 611 FunFam Two-component response regulator 206 269 - -
Trre2g01197 611 MobiDBLite consensus disorder prediction 147 209 - -
Trre2g01197 611 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Trre2g01197 611 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Trre2g01197 611 MobiDBLite consensus disorder prediction 147 167 - -
Trre2g01197 611 Gene3D - 206 269 - -
Trre2g01197 611 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 405 IPR045279 GO:0009736
Trre2g01197 611 SUPERFAMILY CheY-like 23 145 IPR011006 -
Trre2g01197 611 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Trre2g01197 611 Pfam Response regulator receiver domain 26 135 IPR001789 GO:0000160
Trre2g01197 611 CDD REC_typeB_ARR-like 26 140 - -
Trre2g01197 611 PIRSF RR_ARR_type-B 6 608 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre2g01197 611 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Trre2g01197 611 SMART REC_2 24 136 IPR001789 GO:0000160
Trre2g01197 611 Pfam Myb-like DNA-binding domain 212 260 IPR001005 -
Trre2g01197 611 FunFam Two-component response regulator 24 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01197 Trre-Chr2 9618214 9622400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01197 16 248 Response Regulator Gene Family AT4G16110 60.924 7.99e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre2g01197 Response_reg 4.9e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01197 - K14491 gmx:100817125 723.005