Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01190 ATGTCTTCTTCACGAACAACAACCGAAACAGAAACGCAAGACTCACAAGCGCCGCTCCTCCGTCCACGTCATGAAGGCGGCGGTCGAGGTACTTCCCTCGCGCTCTTACTCGGACGCGCCGCCGGAAGAAGAGGACCGTCGGTACTTGTACGAGAGACAGCGGCGCGTGAGCTTGAAGAGCGTCGTGCTGACTGGGGATACTCAAAGCCGGTTGTCGCGCTTGACATGTCGTGGAATATGGCTTTCGTTGTTGTATCGGCGGTGATGCTGTTTTGCACCTTTGATGAGCATCCGAACACGCCGATCCGTGTTTGGATCATCGGTTACGCGCTTCAGTGTTTCGTTCACGTTGTTCTGGTTTGGCTTGAGTATCACCGCCGTAGTCGGAGGGATTCACGGCGGCGACAGAGAAGTAGCGATCCTGAAATGAGTTCCGATGAATACGACAGTGATGACGGCGACGGGAACTCGTCTCAATCCAGATTTACCAAGCGATGTGAATCAATAAATACCGGGGTTTCATTCCTTTGGTGGATGCTGGGCTTTTACTGGATTGTCTCTGCAGATGATATGCTTCTGCAAGATGCTCCACACTTGTACTGGTTGGCCGTTATCTTTCTGGCATTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTAATTGGTATTGCTCTCTGCTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCAAAATATAGATTTCGATTACTAAACAATGAGGAGAAGGATAATGGTGGAGCTGGATCAATGGTTCCTATAGAAACCACCAGTGCATACTTGGCAAATGAGCGGGTGCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTCTGCACATACGAGGATGGAGTAGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAAATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATGA 1056 0.4801 MSSSRTTTETETQDSQAPLLRPRHEGGGRGTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLFCTFDEHPNTPIRVWIIGYALQCFVHVVLVWLEYHRRSRRDSRRRQRSSDPEMSSDEYDSDDGDGNSSQSRFTKRCESINTGVSFLWWMLGFYWIVSADDMLLQDAPHLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKDNGGAGSMVPIETTSAYLANERVLLPEDAECCICLCTYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01190 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 346 IPR013083 -
Trre2g01190 351 CDD RING-H2_PA-TM-RING 299 341 - -
Trre2g01190 351 FunFam E3 ubiquitin protein ligase RIE1 280 348 - -
Trre2g01190 351 MobiDBLite consensus disorder prediction 133 161 - -
Trre2g01190 351 MobiDBLite consensus disorder prediction 1 17 - -
Trre2g01190 351 Pfam Ring finger domain 299 341 IPR001841 -
Trre2g01190 351 PANTHER TARGET OF ERK KINASE MPK-1 40 349 - -
Trre2g01190 351 MobiDBLite consensus disorder prediction 1 29 - -
Trre2g01190 351 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Trre2g01190 351 SUPERFAMILY RING/U-box 288 345 - -
Trre2g01190 351 SMART ring_2 300 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01190 Trre-Chr2 9564215 9568196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01190 14 350 C3H Transcription Factor Family AT1G68070 68.343 3.77e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01190 - - aip:107643865 511.531