Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01189 ATGTCAATTCTCAGCTCTCTCCGATCATCAAAACTCATCACCTGGAAACCCACTGGAAAGCTTCAACAAACCCTAACAAGAGCTGTGGAACGCAAAGGAATCTCTTTGCATTCAGGAAAAGTTTCGAAGGTGAAATTGTGTCCTGGATTTGCAGGTCAAGGAAGGTATTTCGATTTTCGGTCGAATTTGGTTCCTGCTTCTGTTGAATTTGCTCAGGTTTCGCCTCTTTGTACTACTTTGTGTAAAGATGGGCTGAAGATTCGGACTGTGGAGCATTTGCTTTCGGCGTTGGAGGCTGTTGGTGTTGATAATTGTAGAATTGAGATTGAGAATTTGGATGATCAAGGTGATGATGTTGAGATTCCTATACTTGATGGGTCGGCAAGGGAATGGGTGGCAGCCTTGGAAGAAGTGGGTTTAGAGATAGCAACTGATGTTGATGGAAAAAGCTATGAGAAAATAGCTCCACATGTTAATGAACCAGTGCATGTTTGGAGGAATGATTCTTTTATTGCTGCATTTCCTTCAGAAGTGGTTCAAGTAACTTATGGTATAAACTTTCCACAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACAACTCCCTTGGATGATTTGGTTTATTCCAAGCAAATAGCAATGTCAAGAACCTTCTGTATCTATGAGGAGGTTGAGCAAATGCGCAGTGCTGGACTTATCAAAGGGGGTTCTCTAGAAAATGCCATTGTGTGCAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTTCATTTCAGTGATGAACCATGCCGTCACAAGATTTTAGATCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGTAATCAAGGACTCCCCGTAGCACACACTGTAGCTTATAAGGGTGGTCATGCATTGCATGTTGATTTGGCTCGCCAACTGATGGGAATAACATGA 933 0.4298 MSILSSLRSSKLITWKPTGKLQQTLTRAVERKGISLHSGKVSKVKLCPGFAGQGRYFDFRSNLVPASVEFAQVSPLCTTLCKDGLKIRTVEHLLSALEAVGVDNCRIEIENLDDQGDDVEIPILDGSAREWVAALEEVGLEIATDVDGKSYEKIAPHVNEPVHVWRNDSFIAAFPSEVVQVTYGINFPQAPAIGCQWFSTTPLDDLVYSKQIAMSRTFCIYEEVEQMRSAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHTVAYKGGHALHVDLARQLMGIT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01189 310 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
Trre2g01189 310 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Trre2g01189 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Trre2g01189 310 Gene3D lpxc deacetylase, domain 2 157 309 IPR011334 GO:0008759|GO:0009245
Trre2g01189 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Trre2g01189 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Trre2g01189 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 4 308 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01189 Trre-Chr2 9537293 9541701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01189 5 306 Carbohydrate Esterase AT1G25054 65.894 1.37e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01189 K02535 - gmx:100814465 519.62