Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01185 ATGGGTTTCGGAGTTTCCTACGTTCATCACCTTGTTGTGGTGTTTTCTTTGATGTTTGTTTGTGCATGGTCTCAAGATGATGATGGTGATGTGATGCAAAAGCTGAAAAATAAAATCAGTGGTGTTGATTGGTCAGACAAAGATTTTTGCAAATGGGATAAAGTTCATTGTAGTAATGGAAGAAGGGTCACTTCAATTGAAATTCCGCAGAATCTCAATGTTCATGGTTCTTTACCACAAGAATTGGTGCAACTCACTGAGTTAACTTATTTTCGTTGCAGTGGTAATAGTTTATCTGGTAATGTTCCTTACATGCCAAATTCCCTTCAGCATTTGTATATTAACAACAACAATTTCAATTCCATGCCAAATGATTTCTTCACCAACCTCACTAATTTGATAGTGGTGGGAATTGATTATAACCCTTTTTCTCAATGGCAAATTCCTTCTAGTCTTAAGAATTGTTTATCCTTGCGAAATTTTACAGCTGTTAATGCTAGTTTTGTTGGTCAAATCCCTGATTTCTTTGGACAAGATAATTTTCAAAGCTTGAATTTTTTGAGTCTAAGTTTCAACTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTAGTAGTACTTCATTACAGATGCTTTGGGTGAATGGTCAAAACAGTGATAGTAAACTCAATGGTACACTTTCTGTTTTACAAAGTATGACATCATTGCGACAAATTTGGGTTCATGGCAATTTGTTTACCGGTCCTATACCTGATTTTTCAAAACATGATCAATTATATGATGTTAGTTTGAGGGATAATCAATTAACCGGTGTTGTTCCGTCGTCTTTAACTAACCTTACGAGTTTGAAAATTGTGAATTTGACAAACAATAATCTTCAAGGTTCACCTCCTATGTTTCCAAACGGTGTTGAGGTTGATATGGATTTGGTTAAAGGGACTAATAGCTTTTGCACTAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGTTTTGCTTTCTGTTGTTCAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATAGCCCTTGTAATGGCAGTAGTTGGGAAGGGGTTGGTTGTTCTGGTGGTAATATTTCTGCTATTCACTTTCAAAACATGAGTTTATCTGGCACTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGCAGTTGCTTCTTGCTAACAATAATCTCACCGGAACTATACCTAAGGAACTTGCTAGTATGCCGGCTTTGAAATTGCTAGATGTTTCCAATAATTCATTATATGGTCAGATACCGCCGTTTCGCGCAGATGTGATTGTTAAAACCGATATGAATCCTGATATCGGAAAGGATAAACCTTCCAGCTCGCCCGGTTCTAGTACTGGAGGTGAAGATAAGAAGAAACTTGGTGTTGGAGCAATTGTTGGTATTGTGATTGGGATTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTATTATGTATGGTAGAAGACATAATAAGCGCGCCGAAAATGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAAGTGCTGGTGCTGGCGTTGCAGGAGGAACTGGTGGATTTAGTCCATCGGGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTCATTTCGATTCAAGTTTTGAGAGAAGTGACGGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGTGGTTTCGGCACTGTATACAAAGGAGAATTGGCTGATGGAACGAAGATTGCAGTTAAAAGGATGCAATCCGAAATGGTCGGCGACAAAGGACTGGATGAGTTCAAATCTGAAATTGCGGTTCTTAGTAAGGTTCGACATAGACATTTAGTTGCACTCCACGGTTATTGCTTGGAGGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGATGGGTCAAAACCCCTCGAATGTAAGAGAAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTAAAACCATCAAATATCTTGCTTGGGGATGATATGCGTGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCAGAAGGACAAGCCTCATTCCAGACTAGAATTGCTGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACCGGAAGAGTCACCACAAAGGTTGACGTATACAGCTTCGGTGTGATTCTTATGGAGATGATAACCGGAAGGAGAGCAATTGACAACAGCCAACCAGAGGAGAACATCCACCTTGTTACATGGTTCCGCAGGATGCTATTGAGCAAAAACTCATTCGAAAAGATCATTGATCCGACAATGGATATCGACGAGGAAGGCTTGAAGAATTTCAAGACTATTGCAGAATTGGCCAGCAATTGCTGCGCTAGAGAGCCTCATCAACGTCCCGACATGGGACACGTAGTGAACGTACTAGCACCTCTTGTCGAGATTTGGAAGCCAGCTGAACCTGATGCCGATGACATGTATGGGATTGACTTCGAAATGAATTTGCCTCAAGCACTAAGGAAGTGGCAGAATCTTGAAGGAATGAGCAGCACACTCGATGTTTCGTATTCTTCATCGATGGTTGATAGTTGTGAGAATACACAGTCAAGTATACCACCTCGGGCTCCTGGATTTGCTAATTCCTTTACATCTACTGATGCGCGATGA 2793 0.4024 MGFGVSYVHHLVVVFSLMFVCAWSQDDDGDVMQKLKNKISGVDWSDKDFCKWDKVHCSNGRRVTSIEIPQNLNVHGSLPQELVQLTELTYFRCSGNSLSGNVPYMPNSLQHLYINNNNFNSMPNDFFTNLTNLIVVGIDYNPFSQWQIPSSLKNCLSLRNFTAVNASFVGQIPDFFGQDNFQSLNFLSLSFNSLEGNLPNSLSSSTSLQMLWVNGQNSDSKLNGTLSVLQSMTSLRQIWVHGNLFTGPIPDFSKHDQLYDVSLRDNQLTGVVPSSLTNLTSLKIVNLTNNNLQGSPPMFPNGVEVDMDLVKGTNSFCTKVVGQPCSPLVNVLLSVVQPFGYPLKLAQSWQGNSPCNGSSWEGVGCSGGNISAIHFQNMSLSGTISPSFASLSSVTQLLLANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPPFRADVIVKTDMNPDIGKDKPSSSPGSSTGGEDKKKLGVGAIVGIVIGIVGLLGVGVLVFIMYGRRHNKRAENVQTPNAIVVHPRHSGDGNAVKISVAASGSAGAGVAGGTGGFSPSGSVQNVEAGNMVISIQVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMVGDKGLDEFKSEIAVLSKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLECKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFQTRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMITGRRAIDNSQPEENIHLVTWFRRMLLSKNSFEKIIDPTMDIDEEGLKNFKTIAELASNCCAREPHQRPDMGHVVNVLAPLVEIWKPAEPDADDMYGIDFEMNLPQALRKWQNLEGMSSTLDVSYSSSMVDSCENTQSSIPPRAPGFANSFTSTDAR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01185 930 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01185 930 Pfam Protein kinase domain 576 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01185 930 FunFam Leucine-rich repeat receptor-like kinase 327 452 - -
Trre2g01185 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Trre2g01185 930 SUPERFAMILY Protein kinase-like (PK-like) 563 881 IPR011009 -
Trre2g01185 930 FunFam receptor protein kinase TMK1 541 652 - -
Trre2g01185 930 MobiDBLite consensus disorder prediction 446 466 - -
Trre2g01185 930 FunFam Receptor-like kinase TMK4 26 322 - -
Trre2g01185 930 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Trre2g01185 930 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Trre2g01185 930 CDD STKc_IRAK 581 854 - -
Trre2g01185 930 Gene3D Phosphorylase Kinase; domain 1 548 652 - -
Trre2g01185 930 PANTHER OSJNBA0070M12.3 PROTEIN 9 930 - -
Trre2g01185 930 SUPERFAMILY L domain-like 49 435 - -
Trre2g01185 930 SMART serkin_6 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01185 930 Pfam Leucine rich repeat N-terminal domain 332 366 IPR013210 -
Trre2g01185 930 Pfam Leucine rich repeat N-terminal domain 26 58 IPR013210 -
Trre2g01185 930 FunFam receptor protein kinase TMK1 653 870 - -
Trre2g01185 930 Gene3D Transferase(Phosphotransferase) domain 1 653 866 - -
Trre2g01185 930 MobiDBLite consensus disorder prediction 907 930 - -
Trre2g01185 930 Gene3D Ribonuclease Inhibitor 27 323 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01185 Trre-Chr2 9502919 9506253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01185 73 857 Receptor kinase-like Gene Family AT5G07280 31.758 7.89e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre2g01185 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01185 K00924 - gmx:100776064 1204.12