Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01162 ATGAATCAATCCGAGTTTACAAAGATTTCGTCGTCGAGTCGACGCAACATCTTGAAGGTTGAAGGCAAACGCGTCCACGAAGACGTCGGTGGTAGGGATCCATCCAAGCTTCCAAAGATTTCGTCGAGCCAAGACGTCGGTGGTAGTGTTCCAGATATAACCCAGTCCGAGCTTCCAAAGATGTCCAAGAAGGTTGAAGGCAAACACGTCGGTGATCCCAGTCTTAAACGTTGTGTTTGTGGTCGTTACTGTTATGATGATGAATGCTATGAAGATAACAGTGGTTTTGAGGGTTATCCGAGTGCTGAAAGCCGTTATTATGGGGAGATGCTGTCCATGATGGTACCTTCCTACATGCGTCCTTTTGTGGACGAGATGGCTGCTAAGTCTGATGATAAAACTCTTGTGGTAAGCAATATCACATGTGACATAAGAGATGACGATGTTTTCCTTGAGCTTTTTAAGCCTTATGGTGAGGTCAGAAGTGCCAATCTTCTCCCTGCTCTTCCAGGTACTCCCTTTCTTGGGGAAATTGGCTTTGTTACCTTTGTCTCCAAGGAAGATGCTGAGCAGGCTATGTACGCACTCAATGGCTCTGGCCCGCGTGGCCCGGATAAACGCATCCTTACACTTGATTGGGCCTCCATCTTGAAAAAATCACGTTAA 666 0.4655 MNQSEFTKISSSSRRNILKVEGKRVHEDVGGRDPSKLPKISSSQDVGGSVPDITQSELPKMSKKVEGKHVGDPSLKRCVCGRYCYDDECYEDNSGFEGYPSAESRYYGEMLSMMVPSYMRPFVDEMAAKSDDKTLVVSNITCDIRDDDVFLELFKPYGEVRSANLLPALPGTPFLGEIGFVTFVSKEDAEQAMYALNGSGPRGPDKRILTLDWASILKKSR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01162 221 SMART rrm1_1 134 212 IPR000504 GO:0003723
Trre2g01162 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 199 IPR000504 GO:0003723
Trre2g01162 221 Gene3D - 123 219 IPR012677 -
Trre2g01162 221 MobiDBLite consensus disorder prediction 37 51 - -
Trre2g01162 221 MobiDBLite consensus disorder prediction 1 16 - -
Trre2g01162 221 MobiDBLite consensus disorder prediction 1 66 - -
Trre2g01162 221 MobiDBLite consensus disorder prediction 17 34 - -
Trre2g01162 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 216 IPR000504 GO:0003723
Trre2g01162 221 SUPERFAMILY RNA-binding domain, RBD 98 214 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01162 Trre-Chr2 9294604 9295269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01162 115 215 Eukaryotic Initiation Factors Gene Family AT5G06000 34.579 1.61e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01162 K03248 - tpra:123898674 80.1073