Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01155 ATGAGCAAATCCAACAATTTCTTTCATAATCTCATAAAGCCCTTCAAATTTGGTTCAACCAGAGAGGGAAATAGTGAAGACGATATACAGAACATAGCTACACAAGAGCAGAGGACATTTTCCTATGAAACATTGGTTGCTGCTACCAACAACTTCAATGTTCATAACAAGCTTGGTGAGGGAGGTTTTGGACCTGTTTACAAGGGTAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACTTGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACTCGCGTGCAGCACCGTAATGTGGTGAATTTATATGGTTATTGCATCCATGGCAGAGAGAAGCTTCTTGTGTATGAGTATATATCTCGCGAGAGCCTTGACAAGTTTCTATTCAGATCAAACAAGAAACATGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGATTACTTTATCTTCATGAAGACTCTCACAACTGCATAATTCATCGTGACATAAAAGCGGCCAACATTTTACTTGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTCCCCGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCTCCGGAGTACTTGATGCATGGACATCTATCTGTGAAAGCTGATGTGTATAGCTACGGAGTTTTGGTGTTGGAGTTGATCACCGGTCATCGAAACTCCTCCTCTGATTCAGCCTTCAACGGAGACAATCTCCTTAATTGGGCATACAAGCTATACAAGAAAGGGAGGTGGGTAGAAATGGTGGACCCAACAGTAGTATCTTCTGTGACAGTAACAGAACAAGTGGAGACATGCATTCGAGTCAGTCTGCTATGCATACAAGGTGATTCGCAACTTCGTCCAACGATGGGACGTGTGGTGTTGATGTTGTCAAAGAAACCACCAAGTCACATGGAAGAACCAACGAGACCAGGCGTACCCGGTTCCAGATACAAAAGAAGACTGCCTCGTAGTCGTACACCTTTCACTACTGATGATGAAAATGACTCATCTGCTTCACACATTGATTCAAGCAACTGTGACACTACTACTACCACCAATTCCAATTCTTCTGCTACAAGAACGAGTTCGGCTACTGAACAAGTAGACACGAAAGGGAAACGTCCAATGCTACATTGA 1218 0.4294 MSKSNNFFHNLIKPFKFGSTREGNSEDDIQNIATQEQRTFSYETLVAATNNFNVHNKLGEGGFGPVYKGKLNDGREIAVKKLSLGSNQGKTQFVAEAKLLTRVQHRNVVNLYGYCIHGREKLLVYEYISRESLDKFLFRSNKKHELDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDSAFNGDNLLNWAYKLYKKGRWVEMVDPTVVSSVTVTEQVETCIRVSLLCIQGDSQLRPTMGRVVLMLSKKPPSHMEEPTRPGVPGSRYKRRLPRSRTPFTTDDENDSSASHIDSSNCDTTTTTNSNSSATRTSSATEQVDTKGKRPMLH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01155 405 CDD STKc_IRAK 58 325 - -
Trre2g01155 405 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01155 405 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Trre2g01155 405 Pfam Protein kinase domain 53 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01155 405 MobiDBLite consensus disorder prediction 351 365 - -
Trre2g01155 405 MobiDBLite consensus disorder prediction 366 396 - -
Trre2g01155 405 SUPERFAMILY Protein kinase-like (PK-like) 36 342 IPR011009 -
Trre2g01155 405 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01155 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 385 - -
Trre2g01155 405 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Trre2g01155 405 MobiDBLite consensus disorder prediction 324 405 - -
Trre2g01155 405 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Trre2g01155 405 FunFam Cysteine-rich receptor-like protein kinase 2 128 331 - -
Trre2g01155 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01155 Trre-Chr2 9239154 9242559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01155 32 338 Receptor kinase-like Gene Family AT4G11530 50.321 2.69e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g01155 Pkinase 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01155 - - mtr:11421623 717.613