Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01154 ATGTTGGCGACCACAATCTCAATCCTAACACCCTCTTCCAACCTCAACCCTCCTCATTTCCCGCCCTTAACAACAACCAGAGTCACACTCTCACCCTATTCTTCAAAATCACTCTCCAAACTCCCTCTTCTTGCCAGGCTCAGTCACAGTATCAACAGTAACGGTGGTGGTCCTGATCGCGCCGTTGGTCCCACCTCACCTGAAATTGATGAAGTAGAAAGTGAAACATCTTCTGACTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGTATGCTAGGCCTAGATCACGGTCCACCTGATAGAGAACAAGCTATAATTACTCTTTGGCAATATTCACTTGGTGGAAAAAAGTGCATTGACAATATAATGCAATATCCTGGTTGTATTAATCTTGTTGTCAACCTCCTTAGGTCAGAGTCTAGTACGTCCTGCGAGGCAGCTGCAGGCCTTCTGCGTTCGGTATCTTCAATCGACCTATATAGAGATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACTCAATCTGACTTGGCTCTTGAGGTAACCGTGCAGAGTCTGAATATACTGTGGAATTTATCTTTTGATGGGAAGCTCCGTGTTAAACTTGCAAAGAGTGACATTCATTTGTTAGCTATTAAGTACCTTGATGATGAAGATAAGATAGTGAAAGAAGCTGCAGCAGGTGTTTTGGCGAATTTAGCATTGAGCCAAGTTAACCACGACATAATGGTTGAAGCAGGTGTTATTCCGAAATTGGCAAAGTTCTTAACATCTGACTCAGAAGGATCTCCAGTCATTAGAAAGGAAGCAAGGAACGCATTGCTTGAACTTGCGAAGGACGATTATTACAGAATTCTTGTTATCGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATACATTCCGCATAAATATGAGCCGCTTGTATTTCCAGATGGTACAGAAATTGAAAAGACTTATAACAAACCTTCTAAATATGGCGCGTCAGAATTTCTTTTTGGATTAAATGTCGATAATAATGCTAACATAGATGAAGCAAAAATCAACGCAATTATCGGCCAGACACAACAGCAATTCCTTGTTAGTGCCGGTGCTATAGAAAGGGAAGAAACAGAACCTCGTTCTGAAAGTTCAGATGATCAACAGCGTCTTACACTTTTACATTGGATTGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATATGGCAGCAATAATAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTTAATCATTTACTACGGCTTTTGTCTTCCGATGATAATGCAGTCCAGCTGGCAGCAACTCAAGCTTTGGAAAAGCTGGCTGTTAGCAATGTTGTTTGTCGTGTAATTGAAGCTGAGGGTGGTTTAGGTCCTTTAGCTAGTATTTTAAAATGCTCAGACGTATCCGGAGCTATTGTGGAAAAGTCTTTGAACGTACTTGCTCAGATATTAGACCCTAATAAAGCGATGCAATTGAAGTTTTATGATGGACCAGTTAATGGATCTGAAAAGGCATTTGGTGGAGACAACAATGATGGTTCAACGGGATTAAGTAGCACTGACCAAGCCGTATCGGAAACAAAGCCAAGGAACGATATACTGGACTCGGTTTTCACTGCACGCCTTGTTGAGCTTTTAAAGTGCTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTTCTGGAGTTTGTGGCATTGGCGGACCCAACACTGGCTCCAATTATATCCGTGGATATTGAAAATGGTCTCAATTATGCTTTTCAGCAAAACTTCTCGAAAATTTCAGCAGACACAGAATCTGATGTGGAAGATCAGTTTTCAGCGGCATATGCTATTAAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTATTGACAAGACTACTTGACTCTAAGCAGTTTTGCGACAAATTAAATTTCTCCCGTTTCATTGACACGCTCCGCGAAATCCTCAAGTCCAATATTCCCCTACACAGTAAAGATTGGGTAGCTGCTTGTCTAGTTAAACTAAGTTCTCTCTCTGATTACGACATGAGTTCTAATCCAATCAATGTGGAAGTTACACTTTATGAGAAAATTCCAAGACTTGTAGAACAGATCAAAACTTCATTCTCCTTAGAAGCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTATCTGAAGGGGTGGTAGATTCCACAGTGGCTATTATTTCTGAAGGGGCGGTGTATCCTTTGGTGAAACTTATTGAAGAAGGTAGTGCAAAAGGCGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATGCAGCACTTGTAGCTGCTGGAGCAGTTCCAGCTTTAAAAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAAGGCACTTCATTTGCTCAGGAGTTTGCAAACATGA 2514 0.4133 MLATTISILTPSSNLNPPHFPPLTTTRVTLSPYSSKSLSKLPLLARLSHSINSNGGGPDRAVGPTSPEIDEVESETSSDFGDSYVALFVRMLGLDHGPPDREQAIITLWQYSLGGKKCIDNIMQYPGCINLVVNLLRSESSTSCEAAAGLLRSVSSIDLYRDSVADSGAIEEINRLLTQSDLALEVTVQSLNILWNLSFDGKLRVKLAKSDIHLLAIKYLDDEDKIVKEAAAGVLANLALSQVNHDIMVEAGVIPKLAKFLTSDSEGSPVIRKEARNALLELAKDDYYRILVIEEGLVPVPLIGAAAYKSYIPHKYEPLVFPDGTEIEKTYNKPSKYGASEFLFGLNVDNNANIDEAKINAIIGQTQQQFLVSAGAIEREETEPRSESSDDQQRLTLLHWIDGVARLVLILELEDMAAIIRAAESIASACINEHMRIAFKEAGAVNHLLRLLSSDDNAVQLAATQALEKLAVSNVVCRVIEAEGGLGPLASILKCSDVSGAIVEKSLNVLAQILDPNKAMQLKFYDGPVNGSEKAFGGDNNDGSTGLSSTDQAVSETKPRNDILDSVFTARLVELLKCSSPSLQEKAASVLEFVALADPTLAPIISVDIENGLNYAFQQNFSKISADTESDVEDQFSAAYAIKFEEAGLAISAASRLLTRLLDSKQFCDKLNFSRFIDTLREILKSNIPLHSKDWVAACLVKLSSLSDYDMSSNPINVEVTLYEKIPRLVEQIKTSFSLEAQENAVVELNRIVSEGVVDSTVAIISEGAVYPLVKLIEEGSAKGVEASLTILYNLSMDSENHAALVAAGAVPALKRIVLSEKPQWQKALHLLRSLQT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01154 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Trre2g01154 837 SUPERFAMILY ARM repeat 88 303 IPR016024 -
Trre2g01154 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 198 IPR000225 GO:0005515
Trre2g01154 837 Gene3D - 79 307 IPR011989 -
Trre2g01154 837 MobiDBLite consensus disorder prediction 535 558 - -
Trre2g01154 837 SMART arm_5 757 797 IPR000225 GO:0005515
Trre2g01154 837 SMART arm_5 241 284 IPR000225 GO:0005515
Trre2g01154 837 SMART arm_5 798 837 IPR000225 GO:0005515
Trre2g01154 837 SMART arm_5 555 596 IPR000225 GO:0005515
Trre2g01154 837 SMART arm_5 432 472 IPR000225 GO:0005515
Trre2g01154 837 SMART arm_5 157 199 IPR000225 GO:0005515
Trre2g01154 837 Gene3D - 365 612 IPR011989 -
Trre2g01154 837 Gene3D - 622 837 IPR011989 -
Trre2g01154 837 SUPERFAMILY ARM repeat 414 827 IPR016024 -
Trre2g01154 837 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 66 837 - -
Trre2g01154 837 Pfam Armadillo/beta-catenin-like repeat 432 471 IPR000225 GO:0005515
Trre2g01154 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515
Trre2g01154 837 MobiDBLite consensus disorder prediction 537 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01154 Trre-Chr2 9231200 9236317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01154 726 818 U-box Gene Family AT2G28830 38.298 8.65e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01154 - - gmx:100793128 1070.07