Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01153 ATGTTGGCGACCACAATCTCAATCCTAACACCCTCTTCCAACCTCAACCCTCCTCATTTCCCGCCCTTAACAACAACCAGAGTCACACTCTCACCCTATTCTTCAAAATCACTCTCCAAACTCCCTCTTCTTGCCAGGCTCAGTCACAGTATCAACAGTAACGGTGGTGGTCCTGATCGCGCCGTTGGTCCCACCTCACCTGAAATTGATGAAGTAGAAAGTGAAACATCTTCTGACTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGTATGCTAGGCCTAGATCACGGTCCACCTGATAGAGAACAAGCTATAATTACTCTTTGGCAATATTCACTTGGTGGAAAAAAGTGCATTGACAATATAATGCAATATCCTGGTTGTATTAATCTTGTTGTCAACCTCCTTAGGTCAGAGTCTAGTACGTCCTGCGAGGCAGCTGCAGGCCTTCTGCGTTCGGTATCTTCAATCGACCTATATAGAGATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACTCAATCTGACTTGGCTCTTGAGGTAACCGTGCAGAGTCTGAATATACTGTGGAATTTATCTTTTGATGGGAAGCTCCGTGTTAAACTTGCAAAGAGTGACATTCATTTGTTAGCTATTAAGTACCTTGATGATGAAGATAAGATAGTGAAAGAAGCTGCAGCAGGTGTTTTGGCGAATTTAGCATTGAGCCAAGTTAACCACGACATAATGGTTGAAGCAGGTGTTATTCCGAAATTGGCAAAGTTCTTAACATCTGACTCAGAAGGATCTCCAGTCATTAGAAAGGAAGCAAGGAACGCATTGCTTGAACTTGCGAAGGACGATTATTACAGAATTCTTGTTATCGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATACATTCCGCATAAATATGAGCCGCTTGTATTTCCAGATGGTACAGAAATTGAAAAGACTTATAACAAACCTTCTAAATATGGCGCGTCAGAATTTCTTTTTGGATTAAATGTCGATAATAATGCTAACATAGATGAAGCAAAAATCAACGCAATTATCGGCCAGACACAACAGCAATTCCTTGTTAGTGCCGGTGCTATAGAAAGGGAAGAAACAGAACCTCGTTCTGAAAGTTCAGATGATCAACAGCGTCTTACACTTTTACATTGGATTGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATATGGCAGCAATAATAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTTAATCATTTACTACGGCTTTTGTCTTCCGATGATAATGCAGTCCAGCTGGCAGCAACTCAAGCTTTGGAAAAGCTGGCTGTTAGCAATGTTGTTTGTCGTGTAATTGAAGCTGAGGGTGGTTTAGGTCCTTTAGCTAGTATTTTAAAATGCTCAGACGTATCCGGAGCTATTGTGGAAAAGTCTTTGAACGTACTTGCTCAGATATTAGACCCTAATAAAGCGATGCAATTGAAGTTTTATGATGGACCAGTTAATGGATCTGAAAAGGCATTTGGTGGAGACAACAATGATGGTTCAACGGGATTAAGTAGCACTGACCAAGCCGTATCGGAAACAAAGCCAAGGAACGATATACTGGACTCGGTTTTCACTGCACGCCTTGTTGAGCTTTTAAAGTGCTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTTCTGGAGTTTGTGGCATTGGCGGACCCAACACTGGCTCCAATTATATCCGTGGATATTGAAAATGGTCTCAATTATGCTTTTCAGCAAAACTTCTCGAAAATTTCAGACACAGAATCTGATGTGGAAGATCAGTTTTCAGCGGCATATGCTATTAAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTATTGACAAGACTACTTGACTCTAAGCAGTTTTGCGACAAATTAAATTTCTCCCGTTTCATTGACACGCTCCGCGAAATCCTCAAGTCCAATATTCCCCTACACAGTAAAGATTGGGTAGCTGCTTGTCTAGTTAAACTAAGTTCTCTCTCTGATTACGACATGAGTTCTAATCCAATCAATGTGGAAGTTACACTTTATGAGAAAATTCCAAGACTTGTAGAACAGATCAAAACTTCATTCTCCTTAGAAGCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTATCTGAAGGGGTGGTAGATTCCACAGTGGCTATTATTTCTGAAGGGGCGGTGTATCCTTTGGTGAAACTTATTGAAGAAGGTAGTGCAAAAGGCGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATGCAGCACTTGTAGCTGCTGGAGCAGTTCCAGCTTTAAAAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAAGGCACTTCATTTGCTCAGGAGTTTGCAAACATGA 2511 0.413 MLATTISILTPSSNLNPPHFPPLTTTRVTLSPYSSKSLSKLPLLARLSHSINSNGGGPDRAVGPTSPEIDEVESETSSDFGDSYVALFVRMLGLDHGPPDREQAIITLWQYSLGGKKCIDNIMQYPGCINLVVNLLRSESSTSCEAAAGLLRSVSSIDLYRDSVADSGAIEEINRLLTQSDLALEVTVQSLNILWNLSFDGKLRVKLAKSDIHLLAIKYLDDEDKIVKEAAAGVLANLALSQVNHDIMVEAGVIPKLAKFLTSDSEGSPVIRKEARNALLELAKDDYYRILVIEEGLVPVPLIGAAAYKSYIPHKYEPLVFPDGTEIEKTYNKPSKYGASEFLFGLNVDNNANIDEAKINAIIGQTQQQFLVSAGAIEREETEPRSESSDDQQRLTLLHWIDGVARLVLILELEDMAAIIRAAESIASACINEHMRIAFKEAGAVNHLLRLLSSDDNAVQLAATQALEKLAVSNVVCRVIEAEGGLGPLASILKCSDVSGAIVEKSLNVLAQILDPNKAMQLKFYDGPVNGSEKAFGGDNNDGSTGLSSTDQAVSETKPRNDILDSVFTARLVELLKCSSPSLQEKAASVLEFVALADPTLAPIISVDIENGLNYAFQQNFSKISDTESDVEDQFSAAYAIKFEEAGLAISAASRLLTRLLDSKQFCDKLNFSRFIDTLREILKSNIPLHSKDWVAACLVKLSSLSDYDMSSNPINVEVTLYEKIPRLVEQIKTSFSLEAQENAVVELNRIVSEGVVDSTVAIISEGAVYPLVKLIEEGSAKGVEASLTILYNLSMDSENHAALVAAGAVPALKRIVLSEKPQWQKALHLLRSLQT 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01153 836 Gene3D - 79 307 IPR011989 -
Trre2g01153 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Trre2g01153 836 SUPERFAMILY ARM repeat 88 303 IPR016024 -
Trre2g01153 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 198 IPR000225 GO:0005515
Trre2g01153 836 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 66 836 - -
Trre2g01153 836 Gene3D - 365 612 IPR011989 -
Trre2g01153 836 MobiDBLite consensus disorder prediction 535 558 - -
Trre2g01153 836 SUPERFAMILY ARM repeat 393 826 IPR016024 -
Trre2g01153 836 SMART arm_5 756 796 IPR000225 GO:0005515
Trre2g01153 836 SMART arm_5 241 284 IPR000225 GO:0005515
Trre2g01153 836 SMART arm_5 797 836 IPR000225 GO:0005515
Trre2g01153 836 SMART arm_5 555 596 IPR000225 GO:0005515
Trre2g01153 836 SMART arm_5 432 472 IPR000225 GO:0005515
Trre2g01153 836 SMART arm_5 157 199 IPR000225 GO:0005515
Trre2g01153 836 Pfam Armadillo/beta-catenin-like repeat 432 471 IPR000225 GO:0005515
Trre2g01153 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 767 809 IPR000225 GO:0005515
Trre2g01153 836 Gene3D - 619 836 IPR011989 -
Trre2g01153 836 MobiDBLite consensus disorder prediction 537 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01153 Trre-Chr2 9231200 9236317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01153 725 817 U-box Gene Family AT2G28830 38.298 8.41e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01153 - - gmx:100793128 1063.91