Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01143 ATGACATTTCTTTGGTTCTTATTACTCTCCCACATGACAACAACTTCCACTTCATTACACACTTTAGCAGTGAACCAAACGATCCGAGATGGTGGTGGTGAGAGTTTAGTTTCAGTAAGTGGGATCACTGAATTAGGTTTCTTCAGCCCCGGGAGTTCAAAAGGTCGATATTTGGGTGTATGGTACAGGAATGTAACCCCTTTAACAGTCATATGGGTGGCCAATAGAGAAACACCTCTAAAAAACCATTCAGGAGTGTTAAAGCTCAATCCAAACGGGATTTTTCAGCTTCGCAATGGCCCTGCTAACGGCGCTATAATTTGGTCATCGAATACTACAACAAGCAAATCAGGGAATCTGAATAATCCTATAGCTCGGCTCCTTGATTCAGGAAATTTGGTAGTGAAAAATGGACAGCAAACTGATGAGTTTTTGTGGCAGAGTTTTGATTATCCCTCTGATACATTGATGTCCGGAATGAAACTTGGATGGAACTTAGAAATTGGTCTAGAAAGATTCACATCATCATGGAAAAGTGATGATGACCCTGCTGAGGGAGAATATGCTATGAAACTTGACCTTAGAGGATATCCTCAGATAATTATATTCAAAGGGTCTGATATAGATACTAGACCAGGGCCATGGGTCGGCGAGTTCATTGCTGGATCTCAAGAACCAACTCCGGGAGCGGAGCAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGAATACGAGAGTAATGAAAGCTCAACTATCGCGTTAACTAAACTGGCTCCTTCAGGTGATGAGCAGATTCTGTATTGGGTTGTTGGAACGGGCAATAGGCTAGTGTACTCAGATGGGAAGGATGAATGCGAAGACTACGCCTATTGTGGTACAAATTCTATATGCACCATGGATGGTAGCCTTCCAACTTGTGAGTGCTTGAAAGGGTATGTTCCCAAGATTCCTCAACAGTGGAAGCTGTCTCACTGGAAAGACGGTTGTGTACCGAGGAATGAATCTAATTGCAAAAGCAGTACAGAGGGGTTCTTCAAGTACAGACACATGAAGTATCCAGATACATCTTCATCATGGTTTGATAAGAGCTTGAACCTCGAGGAATGTAAGGCGATGTGTCTCAGAAACTGTTCCTGTGTAGCCTATGCTAATTTAGATACCCGCAATGGCGGAACTGGGTGTCTTCTTTGGTTTAATTATCTTGTTGATGTGAGAGAATTCACTAAATGGGGACAAGATATTTATGTCAAAGTCCCTCTTTCAGAACTAGATGTAGATAACCATGGAAACATCAAGAAGATAGTCGGAATCACAGTTGCTGTGATTATTATTATTGGATTCATTACATGTGGATCGATATGTTGGATTAAAAATCGTCCAGGGGCTGCAAGAAATACTTTCAGTTTCAACAAGCGTTATGAAAGAAACCTAAGGAAGGAAGAAGATGTTGACTTGACAACATTCGATTTCTCGGTCTTGGCTTATGCCACTAACAACTTTTCAAGCAGTAACAAACTAGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAATGTTGATGGATGGACAAGAGATAGCTGTGAAAAGACTTTCAAAAAGATCTGGACAAGGCTTGAAAGAATTTAAAAATGAAGTGGCACTGATTGCAAAACTTCAGCACCGTAATCTCATAAAGCTTCTTGGCTGTTGTATTCAAGGAGAAGAAACAATGTTGATCTATGAATACATGCCGAACAAAAGCTTGGACTACTTTGTTTTTGATGACACCAAAACGATGTCACTGGATTGGCTTAGGCGTTTCAATATTATTGGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGAGTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACGTAAATATGGAGCCGAAAATATCAGACTTTGGCTTGGCTCGAATCTTTTTGGGGGACCAAATCGAGGAAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGCGAAATCAGATGTATTTAGTTATGGCGTGATTGTACTAGAGATTGTAAGTGGGAAAAGGAATAGGGGATTTTCAAAACTCGAACAGTGCAATAATCTTCTTGGATATGCATGGAGATTATGGTCGGAAGAGAGAGCCCTGGAACTATTGGATGAAGTGTTACGGGAACAATATACAGCATTTGAAGTCATACGAAGTATACAGGTGGGCTTGTTATGTGTGCAACAAAGCCCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTCAGAAAATATTGCCAGAGCCAACGTTTCCTGGCTTTTACGCGGAAAAAGATCTACGTACCGAATCAGATTCTTCAGTCGCAACTCACAAATTCTGCTCAACTAATGAAATATCCATTACAGAGTTAGATGCGAGATAG 2460 0.4069 MTFLWFLLLSHMTTTSTSLHTLAVNQTIRDGGGESLVSVSGITELGFFSPGSSKGRYLGVWYRNVTPLTVIWVANRETPLKNHSGVLKLNPNGIFQLRNGPANGAIIWSSNTTTSKSGNLNNPIARLLDSGNLVVKNGQQTDEFLWQSFDYPSDTLMSGMKLGWNLEIGLERFTSSWKSDDDPAEGEYAMKLDLRGYPQIIIFKGSDIDTRPGPWVGEFIAGSQEPTPGAEQRFVFNEKEVYYEYESNESSTIALTKLAPSGDEQILYWVVGTGNRLVYSDGKDECEDYAYCGTNSICTMDGSLPTCECLKGYVPKIPQQWKLSHWKDGCVPRNESNCKSSTEGFFKYRHMKYPDTSSSWFDKSLNLEECKAMCLRNCSCVAYANLDTRNGGTGCLLWFNYLVDVREFTKWGQDIYVKVPLSELDVDNHGNIKKIVGITVAVIIIIGFITCGSICWIKNRPGAARNTFSFNKRYERNLRKEEDVDLTTFDFSVLAYATNNFSSSNKLGEGGFGPVYKGMLMDGQEIAVKRLSKRSGQGLKEFKNEVALIAKLQHRNLIKLLGCCIQGEETMLIYEYMPNKSLDYFVFDDTKTMSLDWLRRFNIIGGIARGLLYLHQDSRVRIIHRDLKTSNILLDVNMEPKISDFGLARIFLGDQIEENTNRVAGTYGYISPEYAVHGHFSAKSDVFSYGVIVLEIVSGKRNRGFSKLEQCNNLLGYAWRLWSEERALELLDEVLREQYTAFEVIRSIQVGLLCVQQSPEDRPDMSSVVLMLNGQKILPEPTFPGFYAEKDLRTESDSSVATHKFCSTNEISITELDAR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01143 819 Pfam Protein tyrosine and serine/threonine kinase 504 770 IPR001245 GO:0004672|GO:0006468
Trre2g01143 819 ProSiteProfiles Protein kinase domain profile. 501 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01143 819 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Trre2g01143 819 CDD PAN_AP_plant 336 420 - -
Trre2g01143 819 SMART ntp_6 340 419 IPR003609 -
Trre2g01143 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre2g01143 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Trre2g01143 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 419 - -
Trre2g01143 819 Pfam D-mannose binding lectin 69 178 IPR001480 -
Trre2g01143 819 Pfam S-locus glycoprotein domain 211 316 IPR000858 GO:0048544
Trre2g01143 819 SMART serkin_6 501 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01143 819 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Trre2g01143 819 ProSiteProfiles Bulb-type lectin domain profile. 13 148 IPR001480 -
Trre2g01143 819 SMART blect_4 27 152 IPR001480 -
Trre2g01143 819 Gene3D Hepatocyte Growth Factor 336 417 - -
Trre2g01143 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Trre2g01143 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 149 - -
Trre2g01143 819 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Trre2g01143 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 763 - -
Trre2g01143 819 Gene3D - 14 149 IPR036426 -
Trre2g01143 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Trre2g01143 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 183 IPR036426 -
Trre2g01143 819 CDD B_lectin 31 152 IPR001480 -
Trre2g01143 819 Pfam PAN-like domain 338 405 IPR003609 -
Trre2g01143 819 SUPERFAMILY Protein kinase-like (PK-like) 484 782 IPR011009 -
Trre2g01143 819 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Trre2g01143 819 CDD STKc_IRAK 507 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01143 Trre-Chr2 9173139 9176289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01143 435 787 Receptor kinase-like Gene Family AT4G23190 53.591 1.21e-129 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g01143 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01143 - - gmx:100815430 1065.83