Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01140 ATGAACACTTATTATCATGTCATGGGATTGGTGTTGTTATTCATGGTTTACTTTGTTTTTGGAGCAACAAAAGCCAAGGTAATTAACTGTCCACAAGACATATCATGTGGAAATCAAGTTATCAAATTCCCTTTCCAAATCAAAAACCAAAATCCAACTTCACCTATGTGTGGTGGCTATCCAGGATTTGAGTTAATTTGTTCATCAAACCAAACAATGATTGAACTTCCTCACAAAGTGAAACTCAATGTCAAAAACATTGACTACAAGCACCAAACTATTCAACTTTTAGATCCACAAAAATGCCTTTACAAACATATCCACAACCTCAATCTTTCAGAATCTCATTTCAACTACTTGAAAAGTGATTATGATGATTTTATTGACTATCACTTTTTCAATTGTTCACTTTTGATTAGAAATGAAATAGATTCATATTTAGTTCCTTGTCTAAGCACCTCAACTTCTCAAACATTTGTTATACCCTCTTCTCTATATATTGAAGACCTTCCTCTCTCCTTTTGCACCAAAATGTTTAATGTTTCATTCAAACGTTCCGATTCTATTCGTTTGAGTTGGTCTGAGCCTAATTGTAAAGAGTGTGAATCAAAAGGAAACATATGTAGATGGAAGAATACTACTAGTAGTACCAACAAGAAAATTCATTGTTTCCCCAAAAACAAGAAAGGTTCTTCACCGGCTCTAGTCAACACAGGGTCAATTCTAGGATCATTGTTTTTTATCTTGCTGACTGGAGCAGCCTACCATATTTATGACTCCTACGTTCTGAAGAAAGCAAAACAAGCGATTATAGAAAATCAATGCAACTTGAAAATCCTAAGAAAATATCTGTTCAGATCCTTTGCAATTGTTAGTCATTAA 882 0.3379 MNTYYHVMGLVLLFMVYFVFGATKAKVINCPQDISCGNQVIKFPFQIKNQNPTSPMCGGYPGFELICSSNQTMIELPHKVKLNVKNIDYKHQTIQLLDPQKCLYKHIHNLNLSESHFNYLKSDYDDFIDYHFFNCSLLIRNEIDSYLVPCLSTSTSQTFVIPSSLYIEDLPLSFCTKMFNVSFKRSDSIRLSWSEPNCKECESKGNICRWKNTTSSTNKKIHCFPKNKKGSSPALVNTGSILGSLFFILLTGAAYHIYDSYVLKKAKQAIIENQCNLKILRKYLFRSFAIVSH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01140 293 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 257 IPR046948 -
Trre2g01140 293 Pfam Wall-associated receptor kinase galacturonan-binding 30 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01140 Trre-Chr2 9166277 9169616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01140 35 271 C3H Transcription Factor Family AT2G25410 30.153 1.10e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01140 - - lja:Lj0g3v0257919.2 288.885