Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01138 ATGGTGGTAGTATTACTAATATTCCCTTACAACAAAATGTATGGTGATGAACAACATTCATGTTCACGAAGGTGCGGTGTACATAACATCAGCCACCCTTTTCGGCTGGTAGACAGTCCGAAAAAATGTGGCGACAAAAGGTATACGTTATCATGCGAGGACAACGACCAATTGATTTTGTATGGATCATCTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCATACGTCTATTGGATTTCAAACTTGGTGGTTACTCTATTTATTCCCTTCCTCCTCATTATTCTTTAGGACTTTATAATTTCAGTTCTAACATATACTCATCCTATCAATACACACACCAATATCCGAATGTATTGTCGAAATCTATGTTATATGTAAGTTGTCCAAATAAGGTGCAATATTCCTCTGGTTATAAGTACGGTGCTAACTGTATGAATAGTAGTAGTACTTTGTATTCACAATACGAAAATTCTTTCTATGTTGATGGCTACAACGAATCTGAATCTCTGTCAGATTTGGGGCTGGGAGACGAGTGTCGTATAGAGTTTATGTATCTCACATCTTGGCCTCTTGAACATGGTGGCCGTCATCGTGGCAACAACAACATTTCTTGTGAGGATATCCGTCGTACGATGTTTTATGGATTTGAACTTTCTTGGCTCAATAGTTTTTGTAAAGATGGTTGGATTGCGCTCGTTGACTATAATAACCAGCTTCGCTGTAAAGTTGCGGCGGGGATTTCGTCCAGCGCTGTTAAATTTGTTCTTGGAGTCCCATGTATCATTGTATTGTTAATCTACAAATGGCGACAGAAACATTTATCAACATATGACAACATCGAAGATTTTCTACGTAGTGACAATAGCATAATTCCTATAAGGTACTCTTACAAGGACATAAAAAAGATAACCAAACAGTTTAACACAAAGCTAGGCAGTGGAGGTTATGGATCTGTTTTTAAAGGACAATTACGGAGTGGTCGACTTGTAGCAGTTAAATTATTGGATAAAGTCAAATCTAACGGTCAAGATTTTGTCAATGAAGTTGCTACCATTGGTAGGATTCATCATATTAACATTGTACAACTTATTGGTTTTTGTGTGGAGGGTTCTAAACGTGCTCTTATATATGAATTCATGCCAAACGGGTCACTCGAAAAATACATATTTTCTCATATTGAAAAGAGTAATTCCTTGAGTTGTGAAAATTTGTATGACATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGGTGTAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGACAAGAATTTCAATCCAAAAGTTTCTAATTTTGGACTGGCTAGACTTTATCCTATCGATAAGAGCATTGTGTCGTTAACTGCAGCAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACAGAAATGTTGGCACAATATCTCACAAAGCTGATGTTTATAGCTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCATTGGCCGAGCAATCTAGCAAAATTTATTTCCCATTTTGGATTTATGATCAGTTACATGATGGAAAGGAAGTAACAATTGAGAATGACACAATTCCAGAAATGAAAATGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACGAAACCAAATGATCGTCCTTCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGATGGAGACTTGGAAATTCCTAATAAGCCTTACTTCTATCCACAAGATCAACCAGTAGCAGATGTTGGAGATGATAATATTAGCAGCTCATGGTCTTCATATGGCACATCAGTAAGTGATCCCAGAGAACCAACTTGA 1887 0.3715 MVVVLLIFPYNKMYGDEQHSCSRRCGVHNISHPFRLVDSPKKCGDKRYTLSCEDNDQLILYGSSGKYYVQSINYNNFTIRLLDFKLGGYSIYSLPPHYSLGLYNFSSNIYSSYQYTHQYPNVLSKSMLYVSCPNKVQYSSGYKYGANCMNSSSTLYSQYENSFYVDGYNESESLSDLGLGDECRIEFMYLTSWPLEHGGRHRGNNNISCEDIRRTMFYGFELSWLNSFCKDGWIALVDYNNQLRCKVAAGISSSAVKFVLGVPCIIVLLIYKWRQKHLSTYDNIEDFLRSDNSIIPIRYSYKDIKKITKQFNTKLGSGGYGSVFKGQLRSGRLVAVKLLDKVKSNGQDFVNEVATIGRIHHINIVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHIEKSNSLSCENLYDISLGVARGIEYLHNGCNMKILHFDIKPHNILLDKNFNPKVSNFGLARLYPIDKSIVSLTAARGTIGYMAPELFYRNVGTISHKADVYSFGMLLMEMASRRKNLNALAEQSSKIYFPFWIYDQLHDGKEVTIENDTIPEMKMAKKMMIVALWCIQTKPNDRPSMDKVLEMLEEEDGDLEIPNKPYFYPQDQPVADVGDDNISSSWSSYGTSVSDPREPT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01138 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Trre2g01138 628 SMART serkin_6 309 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01138 628 SUPERFAMILY Protein kinase-like (PK-like) 290 581 IPR011009 -
Trre2g01138 628 FunFam PR5-like receptor kinase 384 591 - -
Trre2g01138 628 Pfam Wall-associated receptor kinase galacturonan-binding 21 83 IPR025287 GO:0030247
Trre2g01138 628 Gene3D Transferase(Phosphotransferase) domain 1 384 589 - -
Trre2g01138 628 MobiDBLite consensus disorder prediction 605 628 - -
Trre2g01138 628 ProSiteProfiles Protein kinase domain profile. 309 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01138 628 Pfam Protein kinase domain 312 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01138 628 Gene3D Phosphorylase Kinase; domain 1 289 383 - -
Trre2g01138 628 FunFam serine/threonine-protein kinase PBS1-like 279 383 - -
Trre2g01138 628 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Trre2g01138 628 MobiDBLite consensus disorder prediction 588 628 - -
Trre2g01138 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 280 599 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01138 Trre-Chr2 9151827 9155405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01138 1 605 Receptor kinase-like Gene Family AT5G38260 34.851 1.07e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01138 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01138 - - aip:107607706 707.983