Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01097 | ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTCCTTCATTTCCTCAACCATGTTGAACCTAGTCCTGGTGTTGATGCTGAAGGGATTGAAGTAGCTAAAGAGTGTTTGGTAGAGGCTTTTAAGATTAACAGCTCATCTTCTGTAACTGGTGATCCTGATTCATTGATTGACATTTTCAAGTCATTTGATGCTAACAAGCAATGTGAAAGAAGTAGGTCTGATTCCGTGAAAGCTTCAAGTTCTGCACCGAGTGCTCCTGATGCGTCGAAATCAATGGATGAAGATTGGATGCTGGACCCTCACATTTCTGCAGTGTCTAAAGATGAACTGTGTGGACAATTCTTTGCTGTTCTGGAGAAAAAACGCTATTTCAGGACCAATATTGATGGAGGTGATGACATTGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATAGTTTTATGGAGATGGAAAGATCTGGGTGTCAGCAGTTTAATTTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATCCAAGCGATACTATGATGCAATTGAGTTGTATAATTGTGCAATTGTGATATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACAGAGGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAATTACAGCAAGGGATACAGTCGTCTGGGATTTGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAACGAGTCTGTTAAAGAAAATATGAGGGCAGCTGAGCATAAATTGATGGAAGAGCAACATCGTGGACATCACAATCAGAATTCAAGATCATCTCAAGAATTCCAAAACCATTCTGCAAGGGGATCAAGAAGCCATGCAGCTCCGCCTCCATTTTCCTCAATGCCATTTAACCCCAGCAATCTTGCAAGCATGTTCATGGCGGCCACAAATGCGTATCAGAGGTCACGTTCTCAGGAAAGTCAAGAAGATGGCAATAGTAGTGGAGCTAATGAACCGGAAATTCAATTTGGGGGCAATGCCAATGTAAACCATGATCAAATCCCTCAGGAACTAAGAGGTGCCTTCCAATCCGTGATGGACATGTTATCAGGAGGGAATGTACCTCCTGGGCAACCACATGATCAAATGAATGGAAGTCAAGAAGATGCCAATAGTAGTGAAGCTGACGAACCCGAAATTCAATTTGGGGGCCATGTTGATTTAAACTCTGTTCAAATCCCTCAGGACCTAAGTGGTGTCCTTCAGAATGTGATGGGGATGTTTTCAGGGAATGCACCTCCCGAGCAACCACATGATCAAATGAATGATAGAACGGCACCAAACTAA | 1431 | 0.4193 | MSHNRITTDSPLSRRIVRSFLHFLNHVEPSPGVDAEGIEVAKECLVEAFKINSSSSVTGDPDSLIDIFKSFDANKQCERSRSDSVKASSSAPSAPDASKSMDEDWMLDPHISAVSKDELCGQFFAVLEKKRYFRTNIDGGDDIVQLEKASRLFDDSFMEMERSGCQQFNLKNLAESLKSLGNKAMQSKRYYDAIELYNCAIVIYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKGYSRLGFAYYAQGNYRDAIDKGFKKALQLDPNNESVKENMRAAEHKLMEEQHRGHHNQNSRSSQEFQNHSARGSRSHAAPPPFSSMPFNPSNLASMFMAATNAYQRSRSQESQEDGNSSGANEPEIQFGGNANVNHDQIPQELRGAFQSVMDMLSGGNVPPGQPHDQMNGSQEDANSSEADEPEIQFGGHVDLNSVQIPQDLSGVLQNVMGMFSGNAPPEQPHDQMNDRTAPN | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 293 | 333 | - | - | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 346 | 379 | - | - | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 303 | 317 | - | - | |
Trre2g01097 | 476 | FunFam | Tetratricopeptide repeat (TPR)-like superfamily protein | 169 | 321 | - | - | |
Trre2g01097 | 476 | ProSiteProfiles | TPR repeat profile. | 208 | 241 | IPR019734 | GO:0005515 | |
Trre2g01097 | 476 | Gene3D | Immunoglobulin FC, subunit C | 3 | 74 | - | - | |
Trre2g01097 | 476 | Pfam | Tetratricopeptide repeat | 208 | 241 | IPR001440 | GO:0005515 | |
Trre2g01097 | 476 | ProSiteProfiles | TPR repeat profile. | 242 | 276 | IPR019734 | GO:0005515 | |
Trre2g01097 | 476 | Coils | Coil | 276 | 296 | - | - | |
Trre2g01097 | 476 | PANTHER | LD24721P | 3 | 468 | IPR047150 | - | |
Trre2g01097 | 476 | SMART | tpr_5 | 174 | 207 | IPR019734 | GO:0005515 | |
Trre2g01097 | 476 | SMART | tpr_5 | 208 | 241 | IPR019734 | GO:0005515 | |
Trre2g01097 | 476 | SMART | tpr_5 | 242 | 276 | IPR019734 | GO:0005515 | |
Trre2g01097 | 476 | Gene3D | Tetratricopeptide repeat domain | 168 | 329 | IPR011990 | GO:0005515 | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 405 | 419 | - | - | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 395 | 425 | - | - | |
Trre2g01097 | 476 | SUPERFAMILY | TPR-like | 173 | 287 | IPR011990 | GO:0005515 | |
Trre2g01097 | 476 | Pfam | Tetratricopeptide repeat | 243 | 276 | IPR013105 | - | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 79 | 102 | - | - | |
Trre2g01097 | 476 | MobiDBLite | consensus disorder prediction | 456 | 476 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01097 | Trre-Chr2 | 8780624 | 8790008 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01097 | 173 | 272 | U-box Gene Family | AT3G07370 | 29.000 | 1.94e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01097 | K16365 | - | gmx:100799770 | 545.043 |