Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01096 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTCCTTCATTTCCTCAACCATGTTGAACCTAGTCCTGGTGTTGATGCTGAAGGGATTGAAGTAGCTAAAGAGTGTTTGGTAGAGGCTTTTAAGATTAACAGCTCATCTTCTGTAACTGGTGATCCTGATTCATTGATTGACATTTTCAAGTCATTTGATGCTAACAAGCAATGTGAAAGAAGTAGGTCTGATTCCGTGAAAGCTTCAAGTTCTGCACCGAGTGCTCCTGATGCGTCGAAATCAATGGATGAAGATTGGATGCTGGACCCTCACATTTCTGTGTCTAAAGATGAACTGTGTGGACAATTCTTTGCTGTTCTGGAGAAAAAACGCTATTTCAGGACCAATATTGATGGAGGTGATGACATTGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATAGTTTTATGGAGATGGAAAGATCTGGGTGTCAGCAGTTTAATTTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATCCAAGCGATACTATGATGCAATTGAGTTGTATAATTGTGCAATTGTGATATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACAGAGGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAATTACAGCAAGGGATACAGTCGTCTGGGATTTGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAACGAGTCTGTTAAAGAAAATATGAGGGCAGCTGAGCATAAATTGATGGAAGAGCAACATCGTGGACATCACAATCAGAATTCAAGATCATCTCAAGAATTCCAAAACCATTCTGCAAGGGGATCAAGAAGCCATGCAGCTCCGCCTCCATTTTCCTCAATGCCATTTAACCCCAGCAATCTTGCAAGCATGTTCATGGCGGCCACAAATGCGTATCAGAGGTCACGTTCTCAGGAAAGTCAAGAAGATGGCAATAGTAGTGGAGCTAATGAACCGGAAATTCAATTTGGGGGCAATGCCAATGTAAACCATGATCAAATCCCTCAGGAACTAAGAGGTGCCTTCCAATCCGTGATGGACATGTTATCAGGAGGGAATGTACCTCCTGGGCAACCACATGATCAAATGAATGGAAGTCAAGAAGATGCCAATAGTAGTGAAGCTGACGAACCCGAAATTCAATTTGGGGGCCATGTTGATTTAAACTCTGTTCAAATCCCTCAGGACCTAAGTGGTGTCCTTCAGAATGTGATGGGGATGTTTTCAGGGAATGCACCTCCCGAGCAACCACATGATCAAATGAATGATAGAACGGCACCAAACTAA 1428 0.4188 MSHNRITTDSPLSRRIVRSFLHFLNHVEPSPGVDAEGIEVAKECLVEAFKINSSSSVTGDPDSLIDIFKSFDANKQCERSRSDSVKASSSAPSAPDASKSMDEDWMLDPHISVSKDELCGQFFAVLEKKRYFRTNIDGGDDIVQLEKASRLFDDSFMEMERSGCQQFNLKNLAESLKSLGNKAMQSKRYYDAIELYNCAIVIYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKGYSRLGFAYYAQGNYRDAIDKGFKKALQLDPNNESVKENMRAAEHKLMEEQHRGHHNQNSRSSQEFQNHSARGSRSHAAPPPFSSMPFNPSNLASMFMAATNAYQRSRSQESQEDGNSSGANEPEIQFGGNANVNHDQIPQELRGAFQSVMDMLSGGNVPPGQPHDQMNGSQEDANSSEADEPEIQFGGHVDLNSVQIPQDLSGVLQNVMGMFSGNAPPEQPHDQMNDRTAPN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01096 475 Pfam Tetratricopeptide repeat 207 240 IPR001440 GO:0005515
Trre2g01096 475 SUPERFAMILY TPR-like 172 286 IPR011990 GO:0005515
Trre2g01096 475 MobiDBLite consensus disorder prediction 292 332 - -
Trre2g01096 475 Coils Coil 275 295 - -
Trre2g01096 475 Gene3D Immunoglobulin FC, subunit C 3 74 - -
Trre2g01096 475 SMART tpr_5 173 206 IPR019734 GO:0005515
Trre2g01096 475 SMART tpr_5 207 240 IPR019734 GO:0005515
Trre2g01096 475 SMART tpr_5 241 275 IPR019734 GO:0005515
Trre2g01096 475 MobiDBLite consensus disorder prediction 404 418 - -
Trre2g01096 475 MobiDBLite consensus disorder prediction 394 424 - -
Trre2g01096 475 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Trre2g01096 475 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 168 320 - -
Trre2g01096 475 Pfam Tetratricopeptide repeat 242 275 IPR013105 -
Trre2g01096 475 Gene3D Tetratricopeptide repeat domain 167 328 IPR011990 GO:0005515
Trre2g01096 475 ProSiteProfiles TPR repeat profile. 241 275 IPR019734 GO:0005515
Trre2g01096 475 MobiDBLite consensus disorder prediction 455 475 - -
Trre2g01096 475 MobiDBLite consensus disorder prediction 345 378 - -
Trre2g01096 475 MobiDBLite consensus disorder prediction 302 316 - -
Trre2g01096 475 MobiDBLite consensus disorder prediction 79 102 - -
Trre2g01096 475 PANTHER LD24721P 3 467 IPR047150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01096 Trre-Chr2 8780624 8790008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01096 172 271 U-box Gene Family AT3G07370 29.000 2.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01096 K16365 - gmx:100799770 548.895