Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01080 ATGGAAAAGTTCGACGGTGAAGCTGGATCCATTTTTGTGAATGAACTGAATGCAACATTTGCTTCCGGTAAAACACAAAGTTACGAATGGAGAATTTCGCAGTTGAACCAACTTTCTAAACTTTTGAACTTTCACGAACAAGAAATCATCGATGCTCTTCGTGATGACATCGATAAACCCCCGCTCGAAACTGTAGCTTACGAGATTTCTATGTTGAAAAACTCATGTAAAAATGCAATCAAAGAATTGAAGCATTGGATGGCTCCAGAAAAGGTCAAAACATCACTCACAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTTGGAGTTGTTTTGGTTATCTCTGCATGGAACTATCCATTTTTGCTATCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGTTGTGGTCTTAAAACCATCGGAAATTGCTCCAGCCACATCATCATTGCTAGCAAAACTATTAGGGGGATATATGGATAACTCAGCTATAAGAGTTGTTGAGGGAGCAGTTGATGAAACAACTGCATTACTACAACAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGCACGCATAGTGATGGCTGCTGCTGCTAAGAACCTTACACCAGTTGTGTTGGAGCTTGGAGGAAAATCACCGGTTATTGTTGATTCAGATATCAACTTACAGGTGGCAACTAGAAGAATAATTGCTGGAAAATGGGGTTGCAATAATGGACAAGCTTGCATTTCTCCAGATTATATTATAACTACAAAAGATTATGCCCCTAAGTTGGTGGATGCTCTGAAGACTGAATTGCAGAGTTTTTATGGAAAGAATCCATTGGAATCAAAAGATTTGTCTCGTATTGTAAACTCAAACCATTTTGCCCGCTTGTCAAAGCTTTTGGATGATGATAAAGTTTCTGGTAAAACTGTTTATGGGGGTGAAAAGGATGAAAGCAAATTGAGGATTAGCCCTACTATTCTATTGGATGTTCCGCGAGATTCTCTGATAATGAGCGAGGAGATATTCGGTCCATTACTTCCCATCATCACGGTTGATAATCTAGAAGAAAGCTTTGATGTGATAAATTCAGGACCAAAACCTCTTGCTGCATATTTATTTACAAACAATAAGAAACTCAAGGAGCGGTTTGTTAAGTCTGTTTCTGCTGGTGGTTTGGTCATCAATGACACTACTCTGCATCTTGCAGTTAAAACTTTGCCTTTTGGAGGAGTAGGAGACAGTGGACTTGGTGCATACCATGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAAGCAGTTTTGTATCGAAGTTTTTTTGGTGATGCTTCTATAAGGTATCCACCATATACCAAGACAAAGATGAGATTGTTGAAGGCTCTCATGACCGGTGGCTTACTAGCTATAATTAATGCCATATTTGGAAAGTCTTAG 1446 0.3887 MEKFDGEAGSIFVNELNATFASGKTQSYEWRISQLNQLSKLLNFHEQEIIDALRDDIDKPPLETVAYEISMLKNSCKNAIKELKHWMAPEKVKTSLTTFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNVVVLKPSEIAPATSSLLAKLLGGYMDNSAIRVVEGAVDETTALLQQKWDKIFYTGNGKVARIVMAAAAKNLTPVVLELGGKSPVIVDSDINLQVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDALKTELQSFYGKNPLESKDLSRIVNSNHFARLSKLLDDDKVSGKTVYGGEKDESKLRISPTILLDVPRDSLIMSEEIFGPLLPIITVDNLEESFDVINSGPKPLAAYLFTNNKKLKERFVKSVSAGGLVINDTTLHLAVKTLPFGGVGDSGLGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTKTKMRLLKALMTGGLLAIINAIFGKS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01080 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 218 418 IPR016163 GO:0016620
Trre2g01080 481 SUPERFAMILY ALDH-like 16 453 IPR016161 GO:0016491
Trre2g01080 481 FunFam Aldehyde dehydrogenase 17 221 - -
Trre2g01080 481 CDD ALDH_F3FHI 13 440 - -
Trre2g01080 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 214 221 IPR029510 GO:0016491
Trre2g01080 481 PANTHER ALDEHYDE DEHYDROGENASE 13 468 IPR012394 GO:0006081
Trre2g01080 481 PIRSF ALDH 2 475 IPR012394 GO:0006081
Trre2g01080 481 Coils Coil 35 55 - -
Trre2g01080 481 FunFam Aldehyde dehydrogenase 218 418 - -
Trre2g01080 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 436 IPR016162 GO:0016491
Trre2g01080 481 Pfam Aldehyde dehydrogenase family 24 438 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01080 Trre-Chr2 8634185 8638305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01080 69 479 Aldehyde Dehydrogenase Gene Family AT1G44170 75.669 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01080 K00128 - gmx:100816594 806.594