Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01078 ATGTCAAAGTCTCCTTCTTCTGAACAACAAAGATCCATTTATTCTGATTCTCAGCCCATGGAATACAATGAGGAAACAGGAATGGACGATCCAGAGTTTACAATGGCAACAGTTGCTAATTTTTTGGAGCAACTGCACGCTAACATGTCATCACCACATGAGAAAGAACTTATAACAGGACGATTATTAGGTGTTTCCAGGAGAAGAAAGGAGGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCGTTGCTCATAAACATTCTCAGAAATGGAACCCCTCCTGCTAAAGTTAATGTAGCTTCCACTCTGAGTATCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCAGTTTTAAAATATGAATCCACTGATGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGACTCAACTAAATCCACAGAACAAGGAAGACAAAGCTGTGGAGGGTTTTATTACCGGAGCATTAAGAAATCTATGTGGGGAAAAGGATGATTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATTGTGGATCTCTTGTCTTCAGATAATTCTTTTTCTCAGTCGAATGCAGCTTCCCTGTTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGTTTTACTTCGACTTATTGGTCAGAAAAATGACATTTCTGTGCGAGCCAGTGCTGCCGATGCCCTGGAGGCTCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTTAATGAAGATGGTGTTCCAATCCTTATCGGAGCTATTGTTGCCCCTTCAACAGAGTGTATGCGAGGTGATGGTGGTCGGGCCTTGCAAGAGCATGCCACTCGAGCTTTAGCCAACATCTACGGGGGCATGTCTGCTTTAATAATATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTGCTGCACCAGTTGGTGATATAATTGGTGCACTTGCTTATGCGCTCATGGTCTTTGTTGAAAACCCTGACGTTGGTGAGGAACATTTTGATGCAACTCAGATAGAGGATAAACTAGTAACTCTTTTAAAGCCTAGAGACAACAAGCTGATTCAAGCGCGTGTTCTCGAGGCCATGGCTAGCCTTTATGGAAATGTCTATCTCTCAAAGTGGCTCGTTCAAGCAGATTCAAAAAAGGTTCTCATTGGACTTATAACTATGGCTGCTCCTGATGTGCAAGAGTATCTGATACTTTCACTGACAAGCTTGTGTTGTGAAAGGATTGGAATATGGGAGGCCATAAAAAAACGAGAAGGTATCCAATTGCTGATATCATTGGTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAATTGCTAGCGATCTTAACCCACCAGGTTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGGATTCCGCCATTGGTGCAGTTGTTGGAGACAGGATCACCAAAAGCAAGAGAGGAAGCGGCTAATGTTCTTTGGAGTTTGTGCTGCCACAGTGAAGATATCCGTGCCTGTGTTGAAAGTGCTGGAGCCATACCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGATCAAAAGGACAAGAAGCTTCTGCCATGGCACTGACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAACCAGCTATTAGCATTGCTCCTAGGGGACTCTACAAGCTCAAAGGCCCATATAATTCGGGTTTTAAGTCATGTGCTTTCTATTGCTTCACAGAAGGACCTCCTTCAGAAGGGATCTGCAGCCAATAAAGGACTGAGTTCTCTTGTTCAAGTTCTCAATTCATCAAATGCGGAAACCCAAGAATATGCAGCTTCAGTCCTTGCTGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTTGCAACGGATGAGATCGTTCTTCCTTGCATGATGAAGCTTTTGAGTAGCAAAACTCAAGGTGTTGCCATGCAGTCTGCTCGAGCCTTATGTGCTCTGTCTCGTCCAACCAAGAACAAAGCTGCAAATATGATCTCTTATATTTTAGAGGGTGATGTTGAGCCACTAATCAAATTAGCTAAATCATCCTCTATTGATGCTGCTGAAACTGCTGTTGCTGCATTAGCCAATCTTCTCTTTGATCCTTTTATTGCCGTTGAAGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACACGAGTTCTGGCAGAAGGAACCTCAGAAGGTAAACAAAATGCATCACGCGCACTTCATCAATTACTGAAGCAGTTTCCAGTAGGTGACGTTCTCAAGGGCAATTCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGAATCATTAAGAGTTATGGATATGGATGGAACTGATGCTGCAGATACTTTAGGAGCAATTGCACTGCTCGTCAGGACTAAACAGGGTGTCAACTTAACTTACCCTCCGTGGTTAGCTCTGGGTGAAATACCGTCAAGCTTAGAACTTCTCATCTACTGTTTGGCCGAGGGACCTCCCCTTTTGCAAGACAAGGCAATTGAAATTCTCTCTAGGCTTTGTGGGGATCAGCCAGCTGTTCTTGGTGATTTATTATTTGCTAAATCCAGATCAATTGTTTCATTGGCTAATAGAATAATAAACTCCTCAAGTTCAGAAGTGAAAGTTGGTGGAGCTGCCTTACTAATTTGTGCTGCCAAAGAGAAGAAAGGGCTTTCAATGGATTTACTCGACTCTTCTGGTTATCTAAAACCACTAATATATTCATTAGTTGATATGGTGAAGCAGAGTTGTAACTGTTCTTCATTAGATATTGAAGTATTCACCACCAAAGGTTTTATGGAGAGAAATGCATTTCAAGAAGTTGACGTGTTTGATATTCCTGATCCGGCTACAGTCTTGGGAGGTACTGTTGCACTGTGGTTGCTCTCAGTTATTGCTTCTTTTCATTCGAAGAGCAAGCTCACAGTTATGGAAGCTGGTGGACTTGAAGCTCTCTGTAGCAAACTTGTGAAACATACTTCAAATCCACAGGCAGAATATGAGGATACCGAAGGAATATGGATCAGTGCCTTGTTCTTGGCCATTTTGTTTAAAGATGCAGACATCATTCTATCACCTGCAACAATGAACATTATACCTACTATAGCTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAACAAGGGGATAAATCTTGTCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGGCATATGGAATCAGATATGCCAAATCTCGTGGCTTTATCAGAAGAATTTTCTTTGGTGCGAAACCCTGATCAAATAGTTTTGGATACCCTTTTTGAAATTGAAGATGTAAGATTAGGGTCTACTGCCCGGAAATCTATACCCCTCTTAGTGGACCTCTTAAGACCAATACCTGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATACAAACAAATCAATTCTGGCAGAAGCTGGAGCTCTGGAGGCTTTGAACAAATACCTGTCATTGAGCCCTCAAGACTCAACTGAGACTGCTATTACAGAATTACTGAGAATATTATATTGTAACTCTGACCTCATTAATCATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGGGCAATTCATGAACTCTTTGATGCCGACTATATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAACACAACATCAGGGAATGAGCAGGAAGCTGCTCTCATGGCCTTGATCAAGTTAACATCAGGAGATTCGTCAAAAGCATCCGTTTTTACTGACGTGGAAGGGAATCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCTTCCGTGGAACTGAAGACCCATGCTGCACATCTCTGCTATGCTCTTTTTGGTAATAGCAAGATCAGAGCAAACCCAATTGCCTCAGAGTGTCTGAAACCCCTTATATCATTAATGCAGTCTGGTTCTGAGACAGCAATAGAATACGGGGTTTGTGCTTTTGATAGATTGTTGGTAGATGAACAGCAGGTGGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTTGGCTTGGTTTCTGGTGGGAACTATCAGCTTATTGATGCCACTATATCTGCTCTAACTAAGTTGGCAAAAGACAGGACTCCTAGCAAACATGACATGATCAAAGCTGGCATTATTGATAATTGTCTCAAGTTATTTCAATCAGCACCTAGCTCACTATGTTCCACAATTGCTGAGCTTTTTCGCATTTTAACTAATAGTGTTGCAATTGCTGGAAGTTCAGAAGCTGCAGAAATAGTAGAACCCCTTTTTAATGTTTTGCTCCGTCAGGATTTCAACTTATGGGGTCAGCACAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCGCAAAGTCTTGCATCCTTAAAGCTTACTCCTAGCCAAGTTATTGAACCCTTGATTTCTTTTCTTGAATCACCATCGGCAACTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGCAACACTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACGGCTTGCAGGAATTCGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCACGAGCTGGCCAAAGGCCGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAACCATCACATGCTCTCTGGGAATCAGCTGCTTTAGTTCTCTCAAATGTCTTACGTTCCAATACTGATTACTATTTTAAAGTTCCAGTGGTGGTTCTTGTAAAACTCTTGAACTCAACACTTGAGAGTACAATTAGCATAGCGCTAAACGCTTTAATAGTTTATGAAAGAAGCTATGGTTCAAGTGCTGAAGAGATGATGGAAGCTGGAGCTATGGATGCTCTGTTGCACCTTATAAGATCTCATCAATGTGAAGAAGCGTCTGGTGGCTTACTTGAAAATTTATTTAACAATGTGAGAATACGGGAGATGAAGATATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACACACCAGATCACAGTCTGGCAAGCTTCTTGCTGCCTTAGCTCTGGGGAATCTTTCCCAGCATGAACGCCATGCTAGAGCTAGTGACTCTGTATCTGCATGTCGTGCATTGATAAGTTTACTAGAGGACCAGCCAACTGAAGAAATGACGATGGTGGCTATATGCGCGTTACAAAACTTTGTCATGAACAGCAGGACCAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTTTCCGAATACAGAAGTTGCTAGACAAGCAGCTCTATTGATCAAATTTTTGTTTTCTACCCACACATTACAAGAGTACGTGTCAAATGAGCTGATCAGATCTTTGACAGCTGCACTCGAAAGAGAGTTATGGTCGACTGCCACAATCAACGAGGAGGTTTTGAAAACACTGCATGTGATATTCATCAACTTTCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCAGGGAATGAAGCAGCTCAAGACTCTGTACTTGACACCTTTTTCTTGCTAAAACAATCATGGTCGACCATGCCAATAGATATAGCAAAATCTCAAGCCATTATTGCCGCTGAAGCCATTCCCATCTTGCAAATGCTCATGAAATCCTGCCCACCAAGTTTCCATGAAAGGGCAGATACTCTTCTGCATTGCTTACCTGGTTGTTTGACTGTCACCATTAAACGTGGAAACAATCTCAAGCAAAGTATGGGAAGCACCAATGCATTTTGCCAGTTGACAATAGGGAATGGCCCTCCAAAACAAACCAAGATAGTGAACCATAGTACTTCACCGGAATGGAAAGAAGGTTTCACATGGGCATTTGATGTACCTCCCAAGGGCCAAAAACTCCATATCGTATGCAAAAGCAAGAATACTTTTGGAAAGTCAAGTCTTGGAAGAGTCACCATCCAAATTGATAAAGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATAGCAACAAAGATGGTTCTTCCCGAACACTTGAAATCGAGATTGTATGGTCTAACAGAATTTCTAATGATGACATTTGA 6411 0.4176 MSKSPSSEQQRSIYSDSQPMEYNEETGMDDPEFTMATVANFLEQLHANMSSPHEKELITGRLLGVSRRRKEARALIGSHAQAMPLLINILRNGTPPAKVNVASTLSILCKDEDLRLKVLLGGCIPPLLSVLKYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWTQLNPQNKEDKAVEGFITGALRNLCGEKDDYWKATLEAGGVDIIVDLLSSDNSFSQSNAASLLARLMLAFSDSIPKVIDSGAVKVLLRLIGQKNDISVRASAADALEALSSKSTKAKKAIVNEDGVPILIGAIVAPSTECMRGDGGRALQEHATRALANIYGGMSALIIYLGELSHSPRLAAPVGDIIGALAYALMVFVENPDVGEEHFDATQIEDKLVTLLKPRDNKLIQARVLEAMASLYGNVYLSKWLVQADSKKVLIGLITMAAPDVQEYLILSLTSLCCERIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTHQVDDSKWAITAAGGIPPLVQLLETGSPKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGSKGQEASAMALTKLVRVADSATINQLLALLLGDSTSSKAHIIRVLSHVLSIASQKDLLQKGSAANKGLSSLVQVLNSSNAETQEYAASVLADLFITRQDICDSLATDEIVLPCMMKLLSSKTQGVAMQSARALCALSRPTKNKAANMISYILEGDVEPLIKLAKSSSIDAAETAVAALANLLFDPFIAVEALAEDVVSALTRVLAEGTSEGKQNASRALHQLLKQFPVGDVLKGNSQCRFTVLALVESLRVMDMDGTDAADTLGAIALLVRTKQGVNLTYPPWLALGEIPSSLELLIYCLAEGPPLLQDKAIEILSRLCGDQPAVLGDLLFAKSRSIVSLANRIINSSSSEVKVGGAALLICAAKEKKGLSMDLLDSSGYLKPLIYSLVDMVKQSCNCSSLDIEVFTTKGFMERNAFQEVDVFDIPDPATVLGGTVALWLLSVIASFHSKSKLTVMEAGGLEALCSKLVKHTSNPQAEYEDTEGIWISALFLAILFKDADIILSPATMNIIPTIALLLRSDEVIDKYFAAQAMASLVCNGNKGINLVIANSGAVAGLITIIGHMESDMPNLVALSEEFSLVRNPDQIVLDTLFEIEDVRLGSTARKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGSDTNKSILAEAGALEALNKYLSLSPQDSTETAITELLRILYCNSDLINHEASTSSLNQLIAVLRLGSRNARYSAARAIHELFDADYIRDSELAKQAIQPLVDMLNTTSGNEQEAALMALIKLTSGDSSKASVFTDVEGNPLESLYKVLSSASSVELKTHAAHLCYALFGNSKIRANPIASECLKPLISLMQSGSETAIEYGVCAFDRLLVDEQQVELAAAYNVVDLLVGLVSGGNYQLIDATISALTKLAKDRTPSKHDMIKAGIIDNCLKLFQSAPSSLCSTIAELFRILTNSVAIAGSSEAAEIVEPLFNVLLRQDFNLWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLESPSATIQQLGTELLSHLLAQQHFQQDITTKNAVVPLVRLAGIRILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPSHALWESAALVLSNVLRSNTDYYFKVPVVVLVKLLNSTLESTISIALNALIVYERSYGSSAEEMMEAGAMDALLHLIRSHQCEEASGGLLENLFNNVRIREMKISKYAIAPLSQYLLDPHTRSQSGKLLAALALGNLSQHERHARASDSVSACRALISLLEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLFPNTEVARQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFINFPKLHISEAATLCIPHLVGALKSGNEAAQDSVLDTFFLLKQSWSTMPIDIAKSQAIIAAEAIPILQMLMKSCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQSMGSTNAFCQLTIGNGPPKQTKIVNHSTSPEWKEGFTWAFDVPPKGQKLHIVCKSKNTFGKSSLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIVWSNRISNDDI 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01078 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Trre2g01078 2136 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Trre2g01078 2136 Gene3D - 633 816 IPR011989 -
Trre2g01078 2136 SUPERFAMILY ARM repeat 443 795 IPR016024 -
Trre2g01078 2136 ProSiteProfiles C2 domain profile. 1989 2106 IPR000008 -
Trre2g01078 2136 Gene3D - 37 155 IPR011989 -
Trre2g01078 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Trre2g01078 2136 Pfam C2 domain 2009 2108 IPR000008 -
Trre2g01078 2136 Gene3D - 826 1144 IPR011989 -
Trre2g01078 2136 Gene3D C2 domain 2009 2134 IPR035892 -
Trre2g01078 2136 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g01078 2136 CDD C2 2010 2100 - -
Trre2g01078 2136 SMART arm_5 111 151 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1290 1330 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 244 285 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 502 542 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 202 242 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1376 1416 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1835 1875 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 623 663 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 287 336 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1459 1499 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 752 792 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 458 500 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1747 1791 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 156 200 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1207 1247 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1417 1457 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 1016 1065 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 544 584 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 69 110 IPR000225 GO:0005515
Trre2g01078 2136 SMART arm_5 711 751 IPR000225 GO:0005515
Trre2g01078 2136 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g01078 2136 Gene3D - 1611 2008 IPR011989 -
Trre2g01078 2136 SMART C2_3c 2009 2105 IPR000008 -
Trre2g01078 2136 SUPERFAMILY ARM repeat 1612 2006 IPR016024 -
Trre2g01078 2136 Gene3D - 1163 1290 IPR011989 -
Trre2g01078 2136 Gene3D - 1291 1607 IPR011989 -
Trre2g01078 2136 Gene3D - 374 632 IPR011989 -
Trre2g01078 2136 SUPERFAMILY ARM repeat 322 460 IPR016024 -
Trre2g01078 2136 SUPERFAMILY ARM repeat 1176 1546 IPR016024 -
Trre2g01078 2136 SUPERFAMILY ARM repeat 857 1287 IPR016024 -
Trre2g01078 2136 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 15 2130 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trre2g01078 2136 SUPERFAMILY ARM repeat 71 308 IPR016024 -
Trre2g01078 2136 Gene3D - 156 365 IPR011989 -
Trre2g01078 2136 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2007 2113 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01078 Trre-Chr2 8602618 8611949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01078 512 790 U-box Gene Family AT3G46510 25.347 7.76e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01078 - - aprc:113846793 3526.87