Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01074 ATGGATCATCATCAACACTTCCTCCACCATCAAGACCACCGTACACGATTCGCTCCTCCAATTCCTCAACATCATCACCTCCTCCCTCAACCACCCTCTCTTCCTCATCCTGCACCTCTCTCTTTCCGTCCTCCACCACCTTACAACCCTCCTTTACCTCACCAATCTCCTCAAATCCCTCTTTATCATTCAGATCATCCCCCTCGCCGTCTCATCCCTGAACCCCTTTGGAACCCTAATCCCGAAGATCGATCCTCCAGAAATTATCCTCCAATCGATTACCACCGCGAATCGCACCACCACCACCAAAACCAAAACCATCGTCCTCTGCCTTCTTATCCACCTATCCGATACGAACACGATACCTCTTACGGAAGATTGAACACCGAAGCAAACCCTAGGGAAACCTTCGTCTACCGCCACCACGTTACTACCGCCTCCGCTTCCCCATTGAATCTAGCTTATCAAGAACGCGACGATGATAGAATCGATAACAGAAGGTGGTTGAATGATAGAAAACTACACAATTCTTCACCTCCTCATTCACCTTTTGAATTGGTGCATGATGAATTAACTGCACGAGATTATCATAGTTCTGAAACGGTTAGGTTTAATGGTGGTAGCAATAGTAGTAGATCCAATAGTAGAGAGTGTAATCATAATCACAATCACAATCATGGCCGTGAATTCAGTCGAACACCGCCGAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAAACGGTAAAGCCTAATCATAGGAACCGTGATGTTGAACAGTTACGTTATGTTCCTGATTCTAACGTTAATTTCTTCAGGGGTAATAATAGTAAAGATCAACGTGGAGGTTATACAAAGGGTGGTGGTGAAGATAGAAAAAAAGAAAACCCAGTTGAAGAATTTGACATTTCTTTGGAATCAAATGTTCTGGTGGCAAAGCCTATTGTCACTTCCAGTGCGGTTTCTGGTAAACTGTCTTCTGTTGTTAGAATCGCTAATGAAGGCGATGCTTCAGAGAAGAATGTAGGTGATGCTTGTGATCCTCATGAGAAAAATGAGGGGGAAGTTTCTGTTGAAGCTAGTGGCACTGGTACTCGTAAATTGGCCTCTAAGATTGTGAAGAAGAAGAAAACTGTTAAAAGAGTGGTGAAAAAAGGTTCTGTAAAAAGTACTATTTCGAATGTGCCGGCTTCACCTTTGTTGGCCAATAAAGTTGTTGGAACTGTGGAAGGAGATAACATGGCACGGAGCTCGTCCAATGCTGCGTCTGGAACTGTCGAAACTGAAACTTGTTTGGAGGAGAAAATCAACGCTGTTGATAAGGTGGCTGTGCCAGAAGATGAAGGTGGTGTATTGGATGAAGATATAAACATGGGTTTGTCCCTGCTAAGTTCGAAGCCAGAAAGCAGCTCACAAGAAGGTAAGAACGATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAAAGGTGGAAGTATTCCAGAGACTCCATCTTGTGTTTCTAGTAGTTTAGGTAAAAGTAGTTGTTCTGATTGTTTAGATGTGTGTAATTCTGTCCATGACTTGCTTAGCTTGACAACTATTGATATGGCTACTAAGTCATTAAATGGAAGTACTTCTGAAATCAATCACTTGGATTGTGGGAACAAGCAATTATGTCAGAGTAAAGTATCTCTATCACCTGGGAAAGATATAGATGTAGGATGCTCAGGGAATAGGAATCTTGTAGGTGTAGGGAATGAAATGAATTACAATGTCATTTCTGCAGATATTATAAGTACACAGGATTCTGCTGATGACAGTGTTTACGGCTTCAATTCCAATGATGCTACAAGTTCAGAAGAGAAAATTACTGTCAATGACAGTGGGAATAACGACATTGATGGAGGGGCTTATTGTGAAAAGATGGCTCCTGTGATCAATCGAAATTCTACGTCTGAAGAAAATTCATATACAGCCATCCCTCTGCCAAGTAGTGGAATGGTTGCTTTTTCAAGTTTAGGAGATACTAGGATTCAGGATGGTCAAGATTGCCTACAACAACATACCAGTGTACTGAATCAGGGCTTTGATGATAGATCGTCTAGTTTGGAAGAGGGTATCATTGTTCACCAATTTGATATCATTAAAGATGCTGAAAAGCAAGTGTCTCCTGGTGAAGTCCCCTTATCTGCTGAGAATTGTGACATAGATAAAACATTTCCAAATTCTAATATTTCACTCGGATTTGATGTAAGGGATACAAGTAAGATAGAAAAGAGAGATGTTAAGACTCGTTTAAATTTTTTGAGTTTGAATTTGGATGATATATCTCTTACTCCAATTAACCATTCAAATGATACTGATAGAGGCTCAACAATTTTATTGAAGGATCCATGTGCTTCAGAAGTCTTGGATGATTCTATTCAAAGCCTAGATTTTTACTCACTATCCAACCAGGTTGGGGACACTGCTTTACATGGGAAAAGAGCTTTTTCAGAGGCTGAGTTTTGTGTTGCAAATAATGACAGTGATGATGAAAATAAGGTTTCACCCGTTTCTAAGAGGAAAAAAGTCACTTCTTGTGACCCAAATTTTACTCAATTTCAAACGGAATTTAGTGATTCAATTGTGGCTACCACATCTAGTGCAGAAGTTCCTATCAGTTTCAGTGATAGCCATGAACATATGAAAGATGACATTGCATTGTCAAGCATGGGCATGGATATTCAGTCTAATGCCCAGTCTATGCCTTATTCAGGTGATATTGCTAAATCGCCTGACTGTATTTTCACTGGAGGATCATTTGAGTCTACAGATGTAAATAGGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAGGTCTCTACACAATGTGAGGACTTGGCAATTCCAAATGTTCAGTTTTCAGAGCAGAAAGATAATGTTACTCCAATCGTGCCTATAAGTAATACTCAAACTGACATTTTGGTTATTGGAAATATCATGGGAGAAAAGACAGATTCACCGGCTGCTGAAAACAATTACCATTATGGAGATGTGCAAATGTCTCCAACGGCTGATATGCTATCTAATGATCTCAATATGAAGGGTGATCTTCTTGCTCAGGAGAACCTTATGCCCTGCCCTGCTGATGGTGATGGAGTCACTATCAGTAACTCAAATAATGAATTGCCTGAGGATTTGCCTGATCCTTTATCAGATATGTATTCTCACGGGATGACATCTGAATTGCCAGATAGAATGATTACTGATTCTACAGAAATGGATATTGATAAAAACATTTGTGGCAATGAAGAAAATCCAGATTGTGTATCTATGGTCAAACATGGTTCTGACTTGGATACTTCATCAATACAGCATACTGAAAAAACTACGAAATCAGATCATGCAATTGAATGTAGTGACCAAATCTCAAGGAATATAATGCCAAAACCAACCCAAGTTTATTCTAAAGTTACACCTCTTGGTCTAAATTCATCATCTTCTGGATTAAATGGAAGCAAAAATCAGCCAGGTGGTGTCATTCTTAAAGCTTCCAAGGGTCATTCTTTTGCCCTTCCGAAGTCAAAGACTCCTGCCTCTTCAATCAATGCATCAAAATCTCGAACTTGGCATCGGACAGATAATAATCCTCCCGCTTCTCTTCCTAGAGTCAATCTTTCAGCAGGAATAGATGCTTCCAAAAGGCCAATTCTCCAAAGGAAAAATAACTTTCAAAATACTTCTTACATCCGTAAAGGTAACAGTCTTGTTAGGAATCCTAGTCCAGTTTCTGCTATACCTCAAATCTTCTCTACCAGTCTTGTGAGGAGACTTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTATCAATCCGCTACCTTTGGGCTTGGGGGAAATACACAAGGGTACTAAACCTGAAAGCAGGGCTGATTTAACAGATCAGCCAATCTACTCAAATCAGGGGAAAAACATATCTTCCCCATTGTTAGAACCTCCTTCCAGTGGCTTCTGTGAAAATGCATCTGATCCTAGGAAGTTCATTGAAACTAATGATGCATCAGCTTCCTCTGAAGATGTACTAAAACAATATGAAACTCCTGAAAATCAAACTGGTCCATCTAGCAATGGGGATTTTCAAACTGAAGCAAATGATGGAAATGTTTCTTCTTTGAACTCAAAAAGAATAGTTTATGTAAAGCCAAAAACAAATCAATTGGTTGCAACTTCGAGTTCTTGTGATATTATTGTCTCTACTGATGACAAGGGCCAAACAGCCATCTCTGATAGCTATTACAAGAGGAAAAAAAATCAATTGGTTAGGACTACATTTGAAAACCATGTCAACCAGACAGTTGCAATGCCCAATAACATTGTAAATTCTGACGGTCAAGGTGACAGTAAAGTACTTTGCAAGAGGAGGTCTACCAAGAGGCGGTCACATAAGGTTGCTGGGATTTCGAGAAAATCTTCAAGAGCATCACTAGTGTGGACACTTGGTAGCAAAAATTCTTCTGGAAATGACAGGAACTCCCGGAATTATCAAAAGGTTTTACCGCACTTGGTTCCATGGAAAAGAACGACATATTTAAGAAGCTTCATTAATAATTCTGCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGTCGGTAAGAAATTGCTTCAATTGAGAAAGAGGGATACTGTATACACCAGGTCAAACCGTGGGTTCTCACTTTGGAAATCCAAAGTTTTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATTGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCTGTTGAGAGGAAGAAGAGAGAGAAGAAAGACCCAGCTCGTATTGGTCCTCAGACAAAGAGAGAACGAATATTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACGCTTCAGAGGATTGCAGATGATGAATCCCTGTCCTCTGCCTCAATCAATTCAGGTCTGGCTTCGAAAAAAGGTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTTCGAATTGGCAATGGGAACCAACTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGATGGAGGGAAGTGTCCTTACATTCACGATCCCTCAAAAATTGCTGTCTGTACTAAATTTCTGAAGGGTTTATGTTCCACTCCAAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCCGATTGTTCATACTTTTTGCAAGGCCTATGCTCAAACGAAAATTGTCCATATAGACATGTCAATGTGAACCCTAAGGCACCTATTTGTGAAGGATTTCTTAAAGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCAAGTTTTGAAGCAACAGGGACCTGTACTCAAGGAACCAAATGCAAGCTTCACCACCCGATAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGTGATCAGAACAACGGTAGAGGACGCTACTTCGGTTCTATTTCTGCCGATGTTTCTGAACCTTTGATTATGGTGGCTCCCAAATTTCCTCAACAGCATGAGGAACATGAAAGTGAACTAACCGACTACATCAGTCTTGATGCGTATGAAGAAGAGGAAGATGCGGTTGACGAATCATTTGAGCTATCAACATTTTGTGACAATGATACCACAGATATTCAGTTGGATACTTGTGATGAACTCATCAAACCTGTTTCTATAATAATGAAGTTTGGTTTGCAATCTCAGTCTAGAAGCCTTCAAGCTTAG 5874 0.4035 MDHHQHFLHHQDHRTRFAPPIPQHHHLLPQPPSLPHPAPLSFRPPPPYNPPLPHQSPQIPLYHSDHPPRRLIPEPLWNPNPEDRSSRNYPPIDYHRESHHHHQNQNHRPLPSYPPIRYEHDTSYGRLNTEANPRETFVYRHHVTTASASPLNLAYQERDDDRIDNRRWLNDRKLHNSSPPHSPFELVHDELTARDYHSSETVRFNGGSNSSRSNSRECNHNHNHNHGREFSRTPPKKQIQKKSALLRIQTVKPNHRNRDVEQLRYVPDSNVNFFRGNNSKDQRGGYTKGGGEDRKKENPVEEFDISLESNVLVAKPIVTSSAVSGKLSSVVRIANEGDASEKNVGDACDPHEKNEGEVSVEASGTGTRKLASKIVKKKKTVKRVVKKGSVKSTISNVPASPLLANKVVGTVEGDNMARSSSNAASGTVETETCLEEKINAVDKVAVPEDEGGVLDEDINMGLSLLSSKPESSSQEGKNDEDSDIGKESRFEKGGSIPETPSCVSSSLGKSSCSDCLDVCNSVHDLLSLTTIDMATKSLNGSTSEINHLDCGNKQLCQSKVSLSPGKDIDVGCSGNRNLVGVGNEMNYNVISADIISTQDSADDSVYGFNSNDATSSEEKITVNDSGNNDIDGGAYCEKMAPVINRNSTSEENSYTAIPLPSSGMVAFSSLGDTRIQDGQDCLQQHTSVLNQGFDDRSSSLEEGIIVHQFDIIKDAEKQVSPGEVPLSAENCDIDKTFPNSNISLGFDVRDTSKIEKRDVKTRLNFLSLNLDDISLTPINHSNDTDRGSTILLKDPCASEVLDDSIQSLDFYSLSNQVGDTALHGKRAFSEAEFCVANNDSDDENKVSPVSKRKKVTSCDPNFTQFQTEFSDSIVATTSSAEVPISFSDSHEHMKDDIALSSMGMDIQSNAQSMPYSGDIAKSPDCIFTGGSFESTDVNRETKSSEHLELQVSTQCEDLAIPNVQFSEQKDNVTPIVPISNTQTDILVIGNIMGEKTDSPAAENNYHYGDVQMSPTADMLSNDLNMKGDLLAQENLMPCPADGDGVTISNSNNELPEDLPDPLSDMYSHGMTSELPDRMITDSTEMDIDKNICGNEENPDCVSMVKHGSDLDTSSIQHTEKTTKSDHAIECSDQISRNIMPKPTQVYSKVTPLGLNSSSSGLNGSKNQPGGVILKASKGHSFALPKSKTPASSINASKSRTWHRTDNNPPASLPRVNLSAGIDASKRPILQRKNNFQNTSYIRKGNSLVRNPSPVSAIPQIFSTSLVRRLTPVSAIPQISSINPLPLGLGEIHKGTKPESRADLTDQPIYSNQGKNISSPLLEPPSSGFCENASDPRKFIETNDASASSEDVLKQYETPENQTGPSSNGDFQTEANDGNVSSLNSKRIVYVKPKTNQLVATSSSCDIIVSTDDKGQTAISDSYYKRKKNQLVRTTFENHVNQTVAMPNNIVNSDGQGDSKVLCKRRSTKRRSHKVAGISRKSSRASLVWTLGSKNSSGNDRNSRNYQKVLPHLVPWKRTTYLRSFINNSASSFNSGSLSAVGKKLLQLRKRDTVYTRSNRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKKDPARIGPQTKRERIFRVGSVRYRMDPSRRTLQRIADDESLSSASINSGLASKKGYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGGKCPYIHDPSKIAVCTKFLKGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNENCPYRHVNVNPKAPICEGFLKGYCADGNECRKKHSYVCPSFEATGTCTQGTKCKLHHPIKQSKGKKRKRSGDQNNGRGRYFGSISADVSEPLIMVAPKFPQQHEEHESELTDYISLDAYEEEEDAVDESFELSTFCDNDTTDIQLDTCDELIKPVSIIMKFGLQSQSRSLQA 1957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01074 1957 ProSiteProfiles Zinc finger C3H1-type profile. 1795 1822 IPR000571 GO:0046872
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1 113 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 271 298 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1357 1379 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 217 236 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g01074 1957 ProSiteProfiles Zinc finger C3H1-type profile. 1823 1845 IPR000571 GO:0046872
Trre2g01074 1957 ProSiteProfiles Zinc finger C3H1-type profile. 1768 1794 IPR000571 GO:0046872
Trre2g01074 1957 Gene3D - 1795 1858 - -
Trre2g01074 1957 PANTHER CCCH ZINGC FINGER 225 1943 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1291 1334 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1182 1215 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 473 493 - -
Trre2g01074 1957 FunFam Zinc finger CCCH domain-containing protein 7 1796 1857 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 24 57 - -
Trre2g01074 1957 Gene3D - 1740 1794 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 201 242 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1304 1324 - -
Trre2g01074 1957 SMART c3hfinal6 1822 1844 IPR000571 GO:0046872
Trre2g01074 1957 SMART c3hfinal6 1795 1821 IPR000571 GO:0046872
Trre2g01074 1957 SMART c3hfinal6 1742 1766 IPR000571 GO:0046872
Trre2g01074 1957 SMART c3hfinal6 1712 1741 IPR000571 GO:0046872
Trre2g01074 1957 SMART c3hfinal6 1768 1793 IPR000571 GO:0046872
Trre2g01074 1957 ProSiteProfiles Zinc finger C3H1-type profile. 1712 1742 IPR000571 GO:0046872
Trre2g01074 1957 FunFam zinc finger CCCH domain-containing protein 3 1743 1794 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 465 505 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1843 1865 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 1185 1213 - -
Trre2g01074 1957 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01074 Trre-Chr2 8557732 8566603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01074 1718 1881 C2H2 Transcription Factor Family AT2G32930 29.310 1.55e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre2g01074 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01074 - - mtr:25482449 2611.64