Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01073 ATGATCTCCGCCTATAATGGAGGCGGAGCCTCCAGTACTGGCCGTACTGTGGTGGTTGGTGTCAAGATGGAATCTAATAGTCATCATAGTACTCAGTTGCTTACTTGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTTAGAAATGATGAAATTGTGAATCAAGATGGGAAATCTTCTCTGTTTTCTCTTGTCAAAGCATTTGATACTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATTTGAAGCTAAAAATTTGCCGGGGATCATCGGTGAGAAGAATTCTGGTTAGAGAAGCAAATGAATATTGTGCAAGTCATGTTATAGTTGGAAAACCTCAAGGTCTTAGTAAAATTAGGCCATCTATTTCTATACATAAGTATTGTGCTAAGAAGCTATCTAAGGATTGTTGGGTTTTTGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCGCCGGAAAATCACACCGACTTAAAAGGTCGCCAAATTGGGTTTCTCGGTTCTTTTCAGTGGAAATTCAGTATGAGTTTAAAAGTACTAAATGACGATATGCACAGATCGATGTTACTGGATTCATCTTACGGTGATAGTGACAAGAACTCATTGGCTATGGTGCCTGTAAAGGTAACTGACGCTGGTTCTAGCGCAATTACTAACACTCTCCATGACAGAGAATCAAATTATTTGAAACCTGGTTGGCCACTACTTGGCAGAATTTCATCATCAGACAAGAAAGTTTCTGAAAGATCGTTGTCTCGCCGGGTTTCTGTAGTCCAATGGGCAATGCAGTTACCCTCTAGAAACATTTCCTTTAATAAAGATAATTTTTTTGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCTGTGGATGCCGAAATAGGGACGATTGCTTCACCTGACCGGAAATCGATAAGCGTTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCTACTTGCAGATTATTTAACTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATCGGTAAAGGAGGAAGTAGTGAGGTTTATAGAGGCTGCCTTCCTGATGGAAAGGAACTTGCTGTTAAGATCTTGAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTGCTTTGAATCACAAAAACATCATTTCCCTCATTGGATTCTGCTTTGAGGATGATAACCTTCTTTTAGTCTATGATTTCTTATCAAGAGGGAGTCTTGAACAAAACCTCCACGGTAATAAGAAAAATCCAATTGAGTTTGGTTGGACTGAGAGGTACAAGGTGGCGATGGGTGTTGCCGAGGCTTTGGAATATCTGCATAATAATGGCAACCAACCGGTGATCCATCGTGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTCGCTAAATGGGCATCGACCTCGTCATCATATATAACCTGCACCGATGTTTCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTGGTGCTTCTTGAGCTTCTTTCCGGGAGAAAGCCTATAAGTGGTGATTATCCTAAGGGTCAAGAGAGCCTTGTAATGTGGGCTAGTCCAATTCTAAATAATGGGAAGCTCTCACAATTGTTGGATCCTAGTTTGGGCGATAACTACGATCATGAAGAGATGGAAAGGATGGTTTTAGCAGCCACCCTTTGTATCAGACGCACTCCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTCCTTAAAGGTGATGCTGATGTAATAAAGCGCGCAAGGGTAGAAATTAATGCTTTGAAAGCTTCAGAGTTGCTTGATGAAGAAGCTTGTCCACCTTCTAACTTACAGTCACACCTTAATCTTGCATTGCTTGACGTGGAGGATGACACACTCTCGTTGTACAGCGTTGACCAAAATGTCTCTTTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCGAGCTTTGATTGA 2091 0.4075 MISAYNGGGASSTGRTVVVGVKMESNSHHSTQLLTWSLVNVAQPGDLILALHVLRNDEIVNQDGKSSLFSLVKAFDTVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANEYCASHVIVGKPQGLSKIRPSISIHKYCAKKLSKDCWVFAVDNGKVVFKRDGSPENHTDLKGRQIGFLGSFQWKFSMSLKVLNDDMHRSMLLDSSYGDSDKNSLAMVPVKVTDAGSSAITNTLHDRESNYLKPGWPLLGRISSSDKKVSERSLSRRVSVVQWAMQLPSRNISFNKDNFFGLDSKSGALVPVDAEIGTIASPDRKSISVPKELEGLHEKYSSTCRLFNYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITALNHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLHGNKKNPIEFGWTERYKVAMGVAEALEYLHNNGNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVSGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNNGKLSQLLDPSLGDNYDHEEMERMVLAATLCIRRTPGARPQMSLISKVLKGDADVIKRARVEINALKASELLDEEACPPSNLQSHLNLALLDVEDDTLSLYSVDQNVSLEDYLRGRWSRSSSFD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01073 696 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 14 154 - -
Trre2g01073 696 ProSiteProfiles Protein kinase domain profile. 350 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01073 696 Gene3D Phosphorylase Kinase; domain 1 316 424 - -
Trre2g01073 696 Gene3D Transferase(Phosphotransferase) domain 1 425 637 - -
Trre2g01073 696 Pfam Protein kinase domain 354 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01073 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre2g01073 696 FunFam Putative receptor-like serine/threonine-protein kinase 425 637 - -
Trre2g01073 696 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Trre2g01073 696 SUPERFAMILY Protein kinase-like (PK-like) 331 620 IPR011009 -
Trre2g01073 696 SMART serkin_6 350 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01073 696 PANTHER OS08G0249100 PROTEIN 214 632 IPR046958 -
Trre2g01073 696 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 319 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01073 Trre-Chr2 8544411 8551429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01073 337 617 Trihelix Transcription Factor Family AT1G68690 45.804 2.63e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre2g01073 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01073 - - gmx:100305405 964.14