Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01057 ATGGAATCCTCTCAGAATAAATACCAAACCCTATCTTGCGTCGAAGAAGATGATGATTCCAACAAATGCAATAATTTCTACGATATCTATGGTCCCCAAGCCAAAGCAGATGTTGTCTTCAAGGAAAACGATAATTCAAATCTGAATCTTGCTGACATTCAAGGACTTGTAACTTGGGTGCTTGGCGAAGGATTCATGCCATCATGGGTTTTTATCAAGAATAAGCCTCTTATTCTCAAAGTAGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTACATGTCACTGTCCAAAGCGCTTCCCAATTTAAAAAAATCATGTGGCAAACCAAGACCAGTCCTTGCTCTCAGTTGTGTATCAGATAGTATGCAAACAATAGACGCACTCCTAACATGCAAGCAGAAAAGAAAAAGGGATCAAGATGGTTCAATTACGACAAAATCTACTCTGACATCTCAACAAGAAGAAGTCTGCGGTGGTGCTGCCGGTCTATCATTTAAGGAGATTACAAAAGATATCCCTTTCCCTGTTGCATACTATACACTTACAGAAAAAGATTTGGAAGAGAATGAATATCCTGTTAATAAGCCAGATTTTCTATCTACTCTTCCTGCTCCTCTGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAAATGTGCATAACAGGTGAGGGGTTTGAGCTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTTAAACCTTCAAATCATATCACTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAATCTGACAGACATTCAGGAAAAGTTCCGAAAACTGGTTTATAAAGAAACTATTCTTGTCGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTAGTCATTGACACAGCAGTATTATATAAACACCCCCGAGGGTCTTCCCATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATCCAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGAAATTAGCATTATTGAAGATCAGAAATGGGCCTGGCTTTGGTGCTCCTCCATCCTTTATGCGGAAAAAACTTCTTTCAATTTTGGGCGAGTCTGGCAAAACTTCTTCAATGATTGATGATATATCAATTGTAAAACGATTTGCCTCCGAGTCCTCTAATGCAATTCCAGTGACTTCTGACGAAGACGCACTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAATTTTCAGAGTTACACACACACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAACAAAAAACTCGCAGAGATGATTGCATTACATACATGTGAGAAGAGTTCTTCAAAAGGGAAAGGCCTCAAGTCGAATGTATCTGCCGAACTGAAGGAAATTCTCACACGCGTGGATAATAGAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGTTGATAGTTTGCACCGGTCATGGTGACACGGCAGTTGTCCGTAGGTTGAGGAAAATGCTTACGGAGGAGGGTGAAACTAATTTTGGTCGTGAGAAGATTGTGGAAAGCTTGGAAGAGTTTCAGGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1713 0.3981 MESSQNKYQTLSCVEEDDDSNKCNNFYDIYGPQAKADVVFKENDNSNLNLADIQGLVTWVLGEGFMPSWVFIKNKPLILKVVMLYMPGLDAALYMSLSKALPNLKKSCGKPRPVLALSCVSDSMQTIDALLTCKQKRKRDQDGSITTKSTLTSQQEEVCGGAAGLSFKEITKDIPFPVAYYTLTEKDLEENEYPVNKPDFLSTLPAPLGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHITDYNTRFSGITAEMLDGVTTNLTDIQEKFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMKLALLKIRNGPGFGAPPSFMRKKLLSILGESGKTSSMIDDISIVKRFASESSNAIPVTSDEDALAKTIKELKNEKVHFIWTQFSELHTHLKKQAEDSDSLNKKLAEMIALHTCEKSSSKGKGLKSNVSAELKEILTRVDNRIHKLYKSLPTNAMLIVCTGHGDTAVVRRLRKMLTEEGETNFGREKIVESLEEFQARAEVALCFVGVKH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01057 570 SUPERFAMILY Ribonuclease H-like 215 368 IPR012337 -
Trre2g01057 570 FunFam RNA exonuclease NEF-sp 212 375 - -
Trre2g01057 570 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 26 379 IPR047021 GO:0004527
Trre2g01057 570 Gene3D - 213 366 IPR036397 GO:0003676
Trre2g01057 570 SUPERFAMILY Alkaline phosphatase-like 382 525 IPR017850 -
Trre2g01057 570 CDD REX1_like 216 365 IPR034922 -
Trre2g01057 570 Gene3D Alkaline Phosphatase, subunit A 367 562 IPR017850 -
Trre2g01057 570 Pfam Exonuclease 216 363 IPR013520 -
Trre2g01057 570 SMART exoiiiendus 214 373 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01057 Trre-Chr2 8395719 8402227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01057 214 363 C2H2 Transcription Factor Family AT3G27970 30.409 2.68e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01057 K14570 - gmx:100802793 889.797