Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01037 ATGGAACAACATCAACAACAGAGTATCCTATGTAAAACCACTGTCCACCAAACAGTTACTAAGAAATTCACAAAACCAAACAAGAGAAATGACACTAATAGTAACCAAATCGAATTACCACGAGTGATTCGATTAACGGTTACTGATGCAGATGCTACTGATTCCTCAAGCGATGAAGAAACACAAACACAGTGTTTGATTCCCCGTAGGAGAATCAAACACTATGTTAATCAGATTGAAATTGAAACCGTTGCCTCAACAACGGTTTCTGGAATTAAGAAAAGGTCTTCAAGAGAAACTAAATTGAAAAATTCCCGGAGACCGGAGAAGAAAGTTGCTGCTGCTGCTGTTGCTGGTGCTGCTCGAGATGAAAGAAAATTCCGCGGTGTTCGGATGAGACCGTGGGGGAAATGGGCGGCAGAGATACGAGATCCGGGGACTCGAGTCCGGTTATGGTTGGGAACATTTAACACTGCTGAAGAAGCTGCTATGGTTTATGATGCTGCCGCGATTAAGTTTCGCGGCAAAGATGCTGTTACAAACTTCGGTGTACCGGAGTTTGAAAATGCTGAAAAAATGGAAGTTGTTAAGGAAAAAACAAAAATCATTATTAATAATGTGAAGACGGAAATTTCCGGTTCCGGTGAAGATTCCGGCGATGAATTTGTTAATCTATCCTCTCCGACGTCTGTTCTCCGGTTTAGACGGGAGGAAATGAATGAAAATGTGAAAACATCTTTTAATGAAGATGAGCCTGTTGAACAGGTTGAACCGGTTGAACTGGTTGAACCGTTTGGTGAATGTGAAGGTGAGACGAGGTTTTTCGAAGAAACTAATGAGTTTTTTCGACAAGAAATTGATGATGTTTTCAATTTTCCAACAACTAATGAATGTTTTTCAAGTATGTTTAATGAAGCTCCTATGGAATTTTTTGATGAAACGACAGAGGTTTTGGTTAATGAGTGTCGTTTAAGTGATCATGTGGAATTTGATAAAACGCACTCACCTTCATCATTGTCATTATCATCGGCAGCTTTATGTGAAGGAGATGATATTCTTGATGATATTTTGTTAGGATTAGAACCTCTTGTTGTGCTTTGA 1101 0.396 MEQHQQQSILCKTTVHQTVTKKFTKPNKRNDTNSNQIELPRVIRLTVTDADATDSSSDEETQTQCLIPRRRIKHYVNQIEIETVASTTVSGIKKRSSRETKLKNSRRPEKKVAAAAVAGAARDERKFRGVRMRPWGKWAAEIRDPGTRVRLWLGTFNTAEEAAMVYDAAAIKFRGKDAVTNFGVPEFENAEKMEVVKEKTKIIINNVKTEISGSGEDSGDEFVNLSSPTSVLRFRREEMNENVKTSFNEDEPVEQVEPVELVEPFGECEGETRFFEETNEFFRQEIDDVFNFPTTNECFSSMFNEAPMEFFDETTEVLVNECRLSDHVEFDKTHSPSSLSLSSAALCEGDDILDDILLGLEPLVVL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01037 366 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Trre2g01037 366 SUPERFAMILY DNA-binding domain 126 183 IPR016177 GO:0003677
Trre2g01037 366 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 CDD AP2 126 182 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Trre2g01037 366 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Trre2g01037 366 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01037 Trre-Chr2 8243868 8244968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01037 11 303 AP2-EREBP Transcription Factor Family AT4G27950 38.558 3.80e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g01037 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01037 - - psat:127091686 408.297