Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01031 ATGGAAACTCAAAAAGTTCCAATAGATGATGACACCTTATTATTCACTGATATTTTCAATGAGACAGAGTTTGGATCAGAAGATCTCTTTTCCATTTTGGAAAATTTCAATAACTTTCCTCCCATTATAAATGAGCAAAACTCAAAAACAACTTCTTCAACTACTCTTCAAGATTTTGAAATTGAGGTTGCTGAAACATCACAAAAATGCAAGAGACAGAAGATTGTTCCTAGTTCTATAGAGGAACCAAATAACAATAACAATGATGGACAACCTAGAATGTCGCATATCGCGGTGGAGCGCAATCGAAGGAAGCTAATGAATGAGCAATTATCTATCTTGAAGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAGTTGAAGGAGTCATTGATTACATAAATGAGTTACATCAACTAGTACAATGCCTAGAATCCAAGAAACAGAGAAAAGTTTACAATGAAGTACTAAGTCCAAAACTATTAATTTCAAGTCCAAGACCATCACCACTAATTAGTCCTAGAACAATCTTACCAATTAGTCCAAGAACTCCACATTCACAACAATGGTTACAACAATGTGGTGGTTATCTTTCATCTGAGCCATCTCCTACTTCTTCGGCATCTTCCATCAACGACAACATCAACGAGCTTGTTGCGAATTCAAAGTCTTCGGTAGCTGATGTTGAGGTTAAGTTTTGTGGTTCACATTTGCTTTTGAAAACAGTTTCGTCGCGAATTCCCGGACAAGCTTTGAGAATAATGTCTGTTCTTGAAGATCTAGCTCTTGAAATTGTTCATGCGAGTGTTAATACTGCTGATGAAACCATGTTAAACTCTTTCACTATTAAGATTGGAATTGAATGTCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAACAAACATTCTGTTAA 933 0.3623 METQKVPIDDDTLLFTDIFNETEFGSEDLFSILENFNNFPPIINEQNSKTTSSTTLQDFEIEVAETSQKCKRQKIVPSSIEEPNNNNNDGQPRMSHIAVERNRRKLMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLVQCLESKKQRKVYNEVLSPKLLISSPRPSPLISPRTILPISPRTPHSQQWLQQCGGYLSSEPSPTSSASSINDNINELVANSKSSVADVEVKFCGSHLLLKTVSSRIPGQALRIMSVLEDLALEIVHASVNTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01031 310 SMART finulus 97 148 IPR011598 GO:0046983
Trre2g01031 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Trre2g01031 310 Gene3D - 82 157 IPR036638 GO:0046983
Trre2g01031 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 158 IPR036638 GO:0046983
Trre2g01031 310 Pfam Helix-loop-helix DNA-binding domain 93 142 IPR011598 GO:0046983
Trre2g01031 310 PANTHER TRANSCRIPTION FACTOR FAMA 20 309 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01031 Trre-Chr2 8185746 8188653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01031 19 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 43.787 8.96e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01031 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01031 K20558 - gmx:100777437 323.168