Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01029 ATGGCATCAGTGTCTACTCAACCACAGTTTCGTTACACGCAGCCACCATCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGTATAGAAGAGGAGCTAATTGAACTTGGAAAGCCATTTGGTAAAGTTGTGAACACAAAGTGCAATGTTGGAGCAAATCGAAATCAAGCTTTTATTGAATTTGCAGATATAAATCAAGCCATTGCGATGATATCATACTATGCTTCATCATCAGAGCCTGCTCAAGTACGGGGGAAAACTGTGTATCTGCAGTATTCCAATAGACAAGAAATAGTGAATAATAAAACTGCTGCAGATGTTGCCGGAAATGTACTGTTGGTAACAATTGAGGGTGCAGATGCACGCCTTGTGAGCATAGATGTTTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTTGAGAAGACAGCTGGATTTCAGGCACTGGTGCAATTCTCAGATCAAGAAACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGCTACCTGCTCCCTGGGCATGTGGGACCATGTACCCTTAAAATCACATATTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGGGACTACACTAATCCTTACCTTCCTGTTGCTCAATCAGCTATGGAGGGAAACGGACAGTCCGTGATGGGCTTGGATGGGAAGAGACTGGAAGCCGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTGCACATGGTTTTCTCTGCTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTAGTTCAATATCCAGATGTTCAAACAGCCATCGTGGCCAAGGAAGCCTTGGAAGGACACTGCATCTATGATGGGGGATTTTGCAAGCTTCACCTCTCCTATTCACGTCATACTGATCTGAGTATAAAGGTCAATAATGACAGAAGCAGAGACTATACCATGCCTACTGCACCGCCACCAGTTATGAACATCCAGCCCTCAGTTTCAGGGCAACAACAAGCTCCCATGACTGGTCCACCTTCTCAACACTACAATACCGCTCAGTACGCTCCAAGTAACAACCAGAATTTTATACCTCAATCTCAGGCTGGATGGGGAACAGCTCCACCAGCACCGCACCCTATGCAACAACAACAACGGATGCATCATAATCCTTACATGCCACCTGGTACAATGCCACCACAAGGTGGCCCTGGAATGATGCAGTATCCCGGTCACATTCATCAATAG 1308 0.4442 MASVSTQPQFRYTQPPSKVLHLRNLPWECIEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDQETATSAKDALDGRSIPSYLLPGHVGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGNGQSVMGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNIQPSVSGQQQAPMTGPPSQHYNTAQYAPSNNQNFIPQSQAGWGTAPPAPHPMQQQQRMHHNPYMPPGTMPPQGGPGMMQYPGHIHQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01029 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 179 IPR000504 GO:0003723
Trre2g01029 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Trre2g01029 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Trre2g01029 435 Gene3D - 5 111 IPR012677 -
Trre2g01029 435 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Trre2g01029 435 MobiDBLite consensus disorder prediction 353 409 - -
Trre2g01029 435 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Trre2g01029 435 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Trre2g01029 435 MobiDBLite consensus disorder prediction 353 389 - -
Trre2g01029 435 FunFam Polypyrimidine tract-binding protein-like 2 242 347 - -
Trre2g01029 435 SUPERFAMILY RNA-binding domain, RBD 250 343 IPR035979 GO:0003676
Trre2g01029 435 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Trre2g01029 435 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Trre2g01029 435 Gene3D - 112 222 IPR012677 -
Trre2g01029 435 Gene3D - 242 345 IPR012677 -
Trre2g01029 435 FunFam Polypyrimidine tract-binding protein homolog 2 5 111 - -
Trre2g01029 435 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 6 413 - -
Trre2g01029 435 SMART rrm1_1 247 317 IPR000504 GO:0003723
Trre2g01029 435 SMART rrm1_1 19 92 IPR000504 GO:0003723
Trre2g01029 435 Pfam RRM-like domain 242 321 IPR021790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01029 Trre-Chr2 8125965 8132791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01029 16 430 Eukaryotic Initiation Factors Gene Family AT1G71770 23.279 2.96e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01029 K14948 - gmx:100810102 724.931