Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01025 ATGAGTACTACTCAGCAAGAGAAGATTGTTAGAAATTATGCTGCATTTAAGACAACAGAGTCAGGGAGATTTAGAAGTAAATTAAGTTCATTTTCGGAGAAGTTTCAAAGAGGACTGGAATCTGGTTCTGAGAGGATAAAGAGGTTCAGAACAACATTCAACTCTTTTCACAATGACAATGCTCTTTCTAGAAACTTTGGTTCTAAAAGGAAAATCCTCGATCCACAAGGTCCATTCCTTCAACAGTGGAACAAGATATTTGTCTTGTTATGTGTTATTGCTGTATCATTGGATCCTTTGTTCTTCTATGTACCTGTGATTGATGGCGAAAATAAATGCCTTTCATTAGACAGAGGGATGGAGATTACAGCCACTTTTTTGAGAACTTTCTCTGATGTTTTTTATATAATCCACATGATTTTCCAGTTTCGTACTGGATTCATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTCGAAGATTCTTGGGTCATTGCTAAGAGGTATCTGGCATCATATTTCTTAGTCGACATTCTTGCGATTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATCCCGAAGATGAGTGGCTTTGAATCGCTCAATACAAAGAACATGCTGAAAGTTGTTGTTTTCTTCCAATATGTGCCTCGGTTATTACGAATAGTTCCATTATATAAGGAAGTTACAAGAACATCTGGTATTCTCACTGAAACAGCTTGGGCGGGAGCTGCATTCAATTTGTTTCTTTACATGCTTGCAAGTCATGTACTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAAAAGCCTGTCGAAATAATCCCATGTGTAACAAAGCAGATATATATTGTAATGATCGGGGAGGGTTTAAGTCAATTTCGAACTTCTTGAATGGTTCTTGCCCAATACTGGAGGAAGATAAAAATAAATTTGATTTTGGGATTTTCCTTGACGCCCTTCAATCCGGTGTTGTGGAGTCAAGAGATTTTACTGATAAACTCTTCTACTGTTTTTGGTGGGGCCTAAAAAATTTAAGTTCTCTTGGCCAGAACCTGGCAACGAGTACCGATTTTTGGGAAATCAATTTCGCAGTTTTCATTTCCATAGCTGGTTTGGTTTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACGACAAGATTGGAGGAAATGAGAGTAAAGAGGAGGGATGCAGAACAGTGGATGTCTCATCGGTTGCTTCCTGACAGCCTGAGAGAGCGAATCAGGCGGTATGATCAGTACAAATGGCAAGAAACCAGAGGTGTAGATGAAGACAGTTTAATTCATGATCTTCCCAAAGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTAGATTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGGACAACTTTTGGACGCAATGTGTGACCGTCTCAAACCAATACTTTACACAGAACAAAGCTACGTTGTTCGAGAAGGGGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGAAAGCTATTGACCATAACTACCAATGGCGGAAGAACCGGCTTCTTCAACTCCGAGTTCTTAAAAGCTGGAGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCCACTAGGACGGTCCAAACCATTGTAGAAGTCGAAGCCTTTGCCCTAAAAGCTGACGATCTGAAGTTTGTGGCATCTCAGTTCCGACGCCTTCACAGCAAGCAGCTGCGCCACACTTTCAGATTCTACTCGCAACAATGGCGCACATGGGCTGCATGTTTTATACAAGCTGCGTGGCGGCGCTATAGCAAGAAGAAGCTTGAAGAGTCTCTTGTTGAAGAGGAGAACAGGCTGAAAGATGCATTGGCAAAGGCTAGTGGTAGCTCAGCAAGTCTAGGTGCCACCATATATGCTTCCAGGTTTGCTGCAAATGCACTCAGATTATTGCGACGAAGTGGCACTGCAAGGAAGACAAGGATGGCGGAGAGAATACCTGCTATGTTACTTCAGAAGCCTGAAGAACCTGACTTTACTGATGAAGAACAATAG 2118 0.4174 MSTTQQEKIVRNYAAFKTTESGRFRSKLSSFSEKFQRGLESGSERIKRFRTTFNSFHNDNALSRNFGSKRKILDPQGPFLQQWNKIFVLLCVIAVSLDPLFFYVPVIDGENKCLSLDRGMEITATFLRTFSDVFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWVIAKRYLASYFLVDILAILPLPQVVILIIIPKMSGFESLNTKNMLKVVVFFQYVPRLLRIVPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWQKACRNNPMCNKADIYCNDRGGFKSISNFLNGSCPILEEDKNKFDFGIFLDALQSGVVESRDFTDKLFYCFWWGLKNLSSLGQNLATSTDFWEINFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYDQYKWQETRGVDEDSLIHDLPKDLRRDIKRHLCLDLLMRVPMFEKMDGQLLDAMCDRLKPILYTEQSYVVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTIVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLVEEENRLKDALAKASGSSASLGATIYASRFAANALRLLRRSGTARKTRMAERIPAMLLQKPEEPDFTDEEQ 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01025 705 Gene3D - 84 399 - -
Trre2g01025 705 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Trre2g01025 705 Gene3D Jelly Rolls 473 593 IPR014710 -
Trre2g01025 705 CDD CAP_ED 475 606 IPR000595 -
Trre2g01025 705 ProSiteProfiles cAMP/cGMP binding motif profile. 475 559 IPR000595 -
Trre2g01025 705 Pfam Ion transport protein 82 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre2g01025 705 Pfam Cyclic nucleotide-binding domain 496 586 IPR000595 -
Trre2g01025 705 SUPERFAMILY cAMP-binding domain-like 404 597 IPR018490 -
Trre2g01025 705 SMART cnmp_10 475 606 IPR000595 -
Trre2g01025 705 Coils Coil 627 647 - -
Trre2g01025 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 700 - -
Trre2g01025 705 Gene3D Helix hairpin bin 401 466 - -
Trre2g01025 705 SUPERFAMILY Voltage-gated potassium channels 74 397 - -
Trre2g01025 705 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01025 Trre-Chr2 8091950 8095096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01025 5 704 Ion Channels AT5G53130 75.732 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01025 K05391 - gmx:100801032 1148.27