Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01013 ATGTCTTGGAAAATGCTTGTTAATCTAATTCTAATTGCTATTATGATCCTTCTAAACCCTCTTCTTTGCCTAACAGAATCAAATCACCAATGTCACCTTTCATCTTGTGGCAATATAGAAAACATCACCTACCCTTTTCGTCTAAAAGGCGATCCCGAAAACTGTGGAGATCCAAATTATGAACTTTCATGTGAGAGAAATCAAACAATACTAAATCTATACAATGGAAAATACATTGTAGAATCCATCAACTACAATAATTCCACAATAAGAGTAACAGATTCAGGTCTCAACAAAGAAAATTGCTCTTCAACTCCTCTCTACACTTTAACAAATGAAAATTTCACCACAGAAGAACCTTATAGATTGTTAGATAATAATAACTTAGAAACCATAGCATTTATAAACTGTGCAGCTTCAATTAATTCTCCTCTATACATTGATACTTCATCTTGTATCAAAGGATTAATCAACTCTTCCAATTATGCTGTGTTTGGTGAGTTAAAGTTATCTGAGTTGGAAGATTCATGCAGCATACTTGTGATGGTTATGATGATGACTTCAAATTTGAACAAAGGTGACAATAAATTTTCATATGTGAATATTCATCAACAACTTGTTTATGGATTAGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTACTGTAAGTTGAACAATAACAATGAAGTCATTGGTTGTTCAAGAACAAGACCTTGCAGAGATGACTATACATCCTCTTTTAAATGTGCTTTAAGAGCGGTTACCGATACAATCGATGACTTGGTTGAAGGTCCTAACAAACTTGGAGCTATCATTGGACTAATTCTTCTGATAAGAATCATAGGAGGAGTACTATTTATTCCTATGTATATGATATATAAATGGAGAAGGAGACATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAAACTCACAACAATCTCATGCCGATACGATACTCTTACTCAGACATTAAAAAAATGACAAAAGGATTCAAGGATAAACTTGGTGAAGGCGGCTATGGTTCTGTTTACAAAGGACAACTTCGCAACGGTGACCTCGTAGCAATCAAAATGTTAGGTGGAAAATCAAGAGCAAATGGACAAGAATTCATCAATGAAGTTGCTACCATTGGAACAATCCATCATGTTAATGTTGTTCGGCTTATTGGATTTTGCGTTGAGAAAACGAAAAGAGCACTTGTTTATGAGTTCATGCCTAATGGTTCACTAGACAAACATATTTTTTCTAGAGAAAGAATGAATAATCCTTTGAGTTGCGAAAAAATGTTCGATATAGCTCTTGGTGTAGCGCGCGGTATTGAATATCTACATAGAGGATGTGACATGAGGATTTTGCATTTTGATATTAAGCCTCATAATATTCTTCTTGATGTGAATTTCAGTCCAAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACTGCTGCAAGAGGAACTATGGGATACATGGCGCCGGAATTGTTCTATAAGAACATTGGAGGAGTATCGTACAAAGCAGATGTTTATAGCTTTGGAATGTTGTTAATGGAAATGGCGAGTAGGAGAAGGAATATGAATGAGGGTGAAGATCATAAGAGTCAAGTTTATTTCCCTTCTTGGGTTTATGATCAATTTAGCGAAGGGAAGGAAATAGAAATGGGGAATGGTACGGAAGAGGAAGAGAAGATATTGAAGAAGATGATAATTGTTGCGTTGTGGTGTATACAGATGAAACCTAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCCTTGGAAATGCCTCCTAAGCCATTTCAAACTCCAAAAGGAATGCCTGTACAAGGCATTGGACAATTCAGAAATCTACCTTGGTTACTACCTGGAGATTCTACAAACTCACTTACAATTGTTGTAAATCGACGTTAA 1980 0.3581 MSWKMLVNLILIAIMILLNPLLCLTESNHQCHLSSCGNIENITYPFRLKGDPENCGDPNYELSCERNQTILNLYNGKYIVESINYNNSTIRVTDSGLNKENCSSTPLYTLTNENFTTEEPYRLLDNNNLETIAFINCAASINSPLYIDTSSCIKGLINSSNYAVFGELKLSELEDSCSILVMVMMMTSNLNKGDNKFSYVNIHQQLVYGLELSWHEIFCKECQGRGYCKLNNNNEVIGCSRTRPCRDDYTSSFKCALRAVTDTIDDLVEGPNKLGAIIGLILLIRIIGGVLFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGDLVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVRLIGFCVEKTKRALVYEFMPNGSLDKHIFSRERMNNPLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDHKSQVYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQFRNLPWLLPGDSTNSLTIVVNRR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01013 659 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre2g01013 659 Gene3D Transferase(Phosphotransferase) domain 1 413 618 - -
Trre2g01013 659 Gene3D Phosphorylase Kinase; domain 1 311 412 - -
Trre2g01013 659 SMART serkin_6 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01013 659 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Trre2g01013 659 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01013 659 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 625 IPR045874 GO:0004672
Trre2g01013 659 FunFam PR5-like receptor kinase 413 621 - -
Trre2g01013 659 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01013 659 CDD STKc_IRAK 343 611 - -
Trre2g01013 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Trre2g01013 659 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Trre2g01013 659 FunFam serine/threonine-protein kinase PBS1-like 307 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01013 Trre-Chr2 7968388 7970735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01013 1 622 Receptor kinase-like Gene Family AT1G66910 35.890 1.26e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01013 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01013 - - cam:101507916 1107.05