Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01010 | ATGGTAACTTCTTCAAATATTGTGTTGGTCGCGATTCTAATCATGGTTTGCAATTTAAACACAGTGATGTGGAGAGTTAATGGTTGTAGCGGGAGGGAAGTCAGGTGTGGACATCACGGTCCACTGATCCGATTTCCCTTCCGACTTAAAGACAGGAAAACAGAACTTGGTTGCAGTTATACTGGCTTTGAGCTTACTTGTTCAGACACACACAAAACACTACTTGAGCTTCCTTCAGATTCTGGTCCAATTTTACTCGAAGTTACAGACATATCTTATGAAATACAGAGTCTATTGGTATCTGACCACGAAAATTGCCTTCCAAGAAAGTTTTTAAAGCTTCTTCAATCACCAATTTCAATTTCTCCTTTTCAATTATTAGTATCATACAGTTATAAGTATAACTTCACTTTGCTCTATTGTAGTTCATTATCCTGTCCGGTTTTTGTTGTTAATCCTACAGATACACTCCTTGATTCGGGTTTCGACCCAATACTTTGCACCAAGACTCTAGATATTTCTTCGGCAGTGTGCCCGCCGTATCAGTATGATGAGAGTATGGCTTTGACATGGTCCAAACCCAATTGTAGCAAATGTGAAAATGAAGGAAAGATGTGTAAACTTAAAAACAACGGAACTGAAGATGAGATAGAATGTTTTGATCATCATCACAAACCAACTAAGAAGATACTTCTATATGCCACAGGTGGGTTTGTTGGTTCGGTTCTGGTGGCATTGATTTTTGCAGCATGTTTCCATCTTTATTTCTATTTTAAACTAAAAGGTGAAGATGAGGTTAGAATCGAAAAGTTCTTAGAGGATTATAGGGTGCTTAATCCTGCGAGATTCTCATATGCTGATATAAAGAGGATTACAAATAATTTTAGGGAAGAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTATCTAATGAAATTCTTGTGGCTGTGAAGATGCTTAACAACACAGAGGGAGATGGAAAAGAGTTCATTAACGAAGTGAAAGCTATGGGAAAAGTTCATCACATCAATGTCGTTCGTTTGGTTGGATTTTGCGCTGATGGATGCTATCGTGCTCTTGTTTATAATTTCTTTCCCAACGGTTCGTTACAAAACTTCATAACAAGAGCTGATGATATGGATCGTTTTCTCGGTTGGGAGAAGCTACAACAAATTGCTCTCGGCATTGCCAAAGGTATTGAGTATCTTCACATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCACACAATGTATTATTAGACGACAAGTTTGTTCCAAAAATTACCGATTTTGGTTTGGCTAAATTGTGTTCTAAAAATCAAAGCATAGTGTCAGTAACTACTGCGAGAGGGACTTTGGGTTACATTGCACCTGAAGTATTTTCGAGGAACTTTGGAAATGTATCGTATAAAGCCGACATATATAGTTATGGCATGTTACTCCTTGAAATGGTTGGAGGAAGAAAGAATACTAGTCAGTTGTCAGAGGGAAATTTTCAAGTCCTATATCCAGAATGGATTCATAATCTACTTGAAGGGAGTGATGTACAAGTGAAAATTGAGGGAGTAGATGATGATATAATTTTAAAGAAACTTGCAGTTATTGGATTATGGTGCATTCAATGGCATCCAATAAATCGTCCATCTATAAAAGTTGTGCTCCAAATGTTAGAGGCTCTGGAGGAAGGAAACTTGGTTGTGCCCCCAAACCCTTTTATCTCGACAAATTTTAAAATTGCTGAAATCCCGACAAAATATTCAACCTTAGAGTTGGAATGTATACATGAATGA | 1809 | 0.3742 | MVTSSNIVLVAILIMVCNLNTVMWRVNGCSGREVRCGHHGPLIRFPFRLKDRKTELGCSYTGFELTCSDTHKTLLELPSDSGPILLEVTDISYEIQSLLVSDHENCLPRKFLKLLQSPISISPFQLLVSYSYKYNFTLLYCSSLSCPVFVVNPTDTLLDSGFDPILCTKTLDISSAVCPPYQYDESMALTWSKPNCSKCENEGKMCKLKNNGTEDEIECFDHHHKPTKKILLYATGGFVGSVLVALIFAACFHLYFYFKLKGEDEVRIEKFLEDYRVLNPARFSYADIKRITNNFREELGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLVGFCADGCYRALVYNFFPNGSLQNFITRADDMDRFLGWEKLQQIALGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKFVPKITDFGLAKLCSKNQSIVSVTTARGTLGYIAPEVFSRNFGNVSYKADIYSYGMLLLEMVGGRKNTSQLSEGNFQVLYPEWIHNLLEGSDVQVKIEGVDDDIILKKLAVIGLWCIQWHPINRPSIKVVLQMLEALEEGNLVVPPNPFISTNFKIAEIPTKYSTLELECIHE | 602 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01010 | 602 | SUPERFAMILY | Protein kinase-like (PK-like) | 275 | 564 | IPR011009 | - | |
Trre2g01010 | 602 | FunFam | PR5-like receptor kinase | 368 | 574 | - | - | |
Trre2g01010 | 602 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 265 | 580 | IPR045874 | GO:0004672 | |
Trre2g01010 | 602 | FunFam | serine/threonine-protein kinase PBS1-like | 263 | 367 | - | - | |
Trre2g01010 | 602 | Pfam | Protein kinase domain | 296 | 561 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01010 | 602 | Pfam | Wall-associated receptor kinase galacturonan-binding | 29 | 102 | IPR025287 | GO:0030247 | |
Trre2g01010 | 602 | ProSiteProfiles | Protein kinase domain profile. | 293 | 579 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01010 | 602 | Gene3D | Phosphorylase Kinase; domain 1 | 267 | 367 | - | - | |
Trre2g01010 | 602 | ProSitePatterns | Protein kinases ATP-binding region signature. | 299 | 321 | IPR017441 | GO:0005524 | |
Trre2g01010 | 602 | Gene3D | Transferase(Phosphotransferase) domain 1 | 368 | 572 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01010 | Trre-Chr2 | 7933881 | 7936277 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01010 | 256 | 579 | Receptor kinase-like Gene Family | AT1G66980 | 46.828 | 8.86e-94 | 309 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Trre2g01010 | Pkinase | 1.1e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01010 | - | - | ahf:112783872 | 675.241 |