Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01010 ATGGTAACTTCTTCAAATATTGTGTTGGTCGCGATTCTAATCATGGTTTGCAATTTAAACACAGTGATGTGGAGAGTTAATGGTTGTAGCGGGAGGGAAGTCAGGTGTGGACATCACGGTCCACTGATCCGATTTCCCTTCCGACTTAAAGACAGGAAAACAGAACTTGGTTGCAGTTATACTGGCTTTGAGCTTACTTGTTCAGACACACACAAAACACTACTTGAGCTTCCTTCAGATTCTGGTCCAATTTTACTCGAAGTTACAGACATATCTTATGAAATACAGAGTCTATTGGTATCTGACCACGAAAATTGCCTTCCAAGAAAGTTTTTAAAGCTTCTTCAATCACCAATTTCAATTTCTCCTTTTCAATTATTAGTATCATACAGTTATAAGTATAACTTCACTTTGCTCTATTGTAGTTCATTATCCTGTCCGGTTTTTGTTGTTAATCCTACAGATACACTCCTTGATTCGGGTTTCGACCCAATACTTTGCACCAAGACTCTAGATATTTCTTCGGCAGTGTGCCCGCCGTATCAGTATGATGAGAGTATGGCTTTGACATGGTCCAAACCCAATTGTAGCAAATGTGAAAATGAAGGAAAGATGTGTAAACTTAAAAACAACGGAACTGAAGATGAGATAGAATGTTTTGATCATCATCACAAACCAACTAAGAAGATACTTCTATATGCCACAGGTGGGTTTGTTGGTTCGGTTCTGGTGGCATTGATTTTTGCAGCATGTTTCCATCTTTATTTCTATTTTAAACTAAAAGGTGAAGATGAGGTTAGAATCGAAAAGTTCTTAGAGGATTATAGGGTGCTTAATCCTGCGAGATTCTCATATGCTGATATAAAGAGGATTACAAATAATTTTAGGGAAGAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTATCTAATGAAATTCTTGTGGCTGTGAAGATGCTTAACAACACAGAGGGAGATGGAAAAGAGTTCATTAACGAAGTGAAAGCTATGGGAAAAGTTCATCACATCAATGTCGTTCGTTTGGTTGGATTTTGCGCTGATGGATGCTATCGTGCTCTTGTTTATAATTTCTTTCCCAACGGTTCGTTACAAAACTTCATAACAAGAGCTGATGATATGGATCGTTTTCTCGGTTGGGAGAAGCTACAACAAATTGCTCTCGGCATTGCCAAAGGTATTGAGTATCTTCACATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCACACAATGTATTATTAGACGACAAGTTTGTTCCAAAAATTACCGATTTTGGTTTGGCTAAATTGTGTTCTAAAAATCAAAGCATAGTGTCAGTAACTACTGCGAGAGGGACTTTGGGTTACATTGCACCTGAAGTATTTTCGAGGAACTTTGGAAATGTATCGTATAAAGCCGACATATATAGTTATGGCATGTTACTCCTTGAAATGGTTGGAGGAAGAAAGAATACTAGTCAGTTGTCAGAGGGAAATTTTCAAGTCCTATATCCAGAATGGATTCATAATCTACTTGAAGGGAGTGATGTACAAGTGAAAATTGAGGGAGTAGATGATGATATAATTTTAAAGAAACTTGCAGTTATTGGATTATGGTGCATTCAATGGCATCCAATAAATCGTCCATCTATAAAAGTTGTGCTCCAAATGTTAGAGGCTCTGGAGGAAGGAAACTTGGTTGTGCCCCCAAACCCTTTTATCTCGACAAATTTTAAAATTGCTGAAATCCCGACAAAATATTCAACCTTAGAGTTGGAATGTATACATGAATGA 1809 0.3742 MVTSSNIVLVAILIMVCNLNTVMWRVNGCSGREVRCGHHGPLIRFPFRLKDRKTELGCSYTGFELTCSDTHKTLLELPSDSGPILLEVTDISYEIQSLLVSDHENCLPRKFLKLLQSPISISPFQLLVSYSYKYNFTLLYCSSLSCPVFVVNPTDTLLDSGFDPILCTKTLDISSAVCPPYQYDESMALTWSKPNCSKCENEGKMCKLKNNGTEDEIECFDHHHKPTKKILLYATGGFVGSVLVALIFAACFHLYFYFKLKGEDEVRIEKFLEDYRVLNPARFSYADIKRITNNFREELGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLVGFCADGCYRALVYNFFPNGSLQNFITRADDMDRFLGWEKLQQIALGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKFVPKITDFGLAKLCSKNQSIVSVTTARGTLGYIAPEVFSRNFGNVSYKADIYSYGMLLLEMVGGRKNTSQLSEGNFQVLYPEWIHNLLEGSDVQVKIEGVDDDIILKKLAVIGLWCIQWHPINRPSIKVVLQMLEALEEGNLVVPPNPFISTNFKIAEIPTKYSTLELECIHE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01010 602 SUPERFAMILY Protein kinase-like (PK-like) 275 564 IPR011009 -
Trre2g01010 602 FunFam PR5-like receptor kinase 368 574 - -
Trre2g01010 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 580 IPR045874 GO:0004672
Trre2g01010 602 FunFam serine/threonine-protein kinase PBS1-like 263 367 - -
Trre2g01010 602 Pfam Protein kinase domain 296 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01010 602 Pfam Wall-associated receptor kinase galacturonan-binding 29 102 IPR025287 GO:0030247
Trre2g01010 602 ProSiteProfiles Protein kinase domain profile. 293 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01010 602 Gene3D Phosphorylase Kinase; domain 1 267 367 - -
Trre2g01010 602 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Trre2g01010 602 Gene3D Transferase(Phosphotransferase) domain 1 368 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01010 Trre-Chr2 7933881 7936277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01010 256 579 Receptor kinase-like Gene Family AT1G66980 46.828 8.86e-94 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01010 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01010 - - ahf:112783872 675.241