Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01008 ATGATTTGTAGTCACTTTACTTCTTCCTTCATGATAGTAGCAATAACATTAATGCTAATACTGCAGCTTGGGAATGCCCATAATATCCCATCCAGGGGGTGTCCCTTCGATATATCTTGTAAACATCGTAACAAGATTCTTGAAATACCTGCTCATCCACTCCCTATAAAACTCATAATAGATGACATTAACTACACATCTCAAGTATTAGAAGCACATGATCCTGAGAATTGTCTTTCACGACTCGTCTATTCATCAATTTTTCCTTTTCGGATTCATGGTGCTGGCTATGGGCATGGTTGGGCATTGGGCGACCATACCAATAATAGTTTTAATGTTAGTTTCTTTGATTGTTCTTCGCTAGGAAGCCTTGATTCGATAGCAGACTACCAAAATGGTGGAACTACTCAAAGCGGGATTTCTTGTCCTATTTTTATCCAACGATTAAATGTAAATATGGTTCAATCTAACCTTGTATTCTGCACCAAACTGTCCCAACCAGTTCCGCCCCTTATTCTTTCAGATGAATCTCTAATGGGGATACGATTAAATTCTATCTCATTGTCTTGGTCAGGAACAAATCTTGACAAAGGATGCTTCAAATGCAAGCACAAATCAAAGAAGAAGATTATTTTATCCGCTGTAGGTGTAATCATTGGCTCAACTATGCTTGTACTTCTATTTGCCATTTTCAAAATATATCACTACATTAAGATGAATAAAGAAGATCATAAAAGAATTGAAAACTTTTTGAAGGATTATAGAGCTTCAAAACCAACCAGGTTCTCTTATGCAGACTTAAAGAGAATTACACATAATTTTAAAGATAAGTTAGGTGAAGGGGCTCATGGAGCTGTTTATAAAGGTAAATTGTCGAACGAAATTTTGGTTGCTGTGAAGATTCTTAATAATGCAGAGGGAGATGGGAAGGAGTTCATAAATGAAGTGGGAACCATGGGCAAAATTCACCATCTCAATGTAGTTCGTTTGCTTGGCTTCTGTGCAGATGGATTTCATCGTGCTTTAGTCTACGACTTTTTTCCAAATGGTTCATTGGAGAAATTCATTTCTCCATTGAACAACAAAGATAATTTCCTTGGATGGGATAAGTTAGAACAAATTGCTCTAGGCATAGCTAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCTCATAATGTTTTGATAGATGACAATTTCACTCCCAAAATCACAGATTTTGGTTTGGCTAAGATATGTTCGAAAAACCAAAGCATCGTATCCATGACTACAGCTAAGGGAACATTGGGATACATGGCACCCGAAGTTTTTTCAAGAAACTTCGGAAATGTCTCATATAAGTCTGATATATACAGTTATGGTATGTTGCTATTAGAAATGGTTGGAGGAAGAAAGAATACAAAAACAACTAGTGGCGAAGAAAATGTTCAAATTGAGTATCCAGAATGGATTCATAATTTGCTTGAAGGAGGAGATATACAAATCCCTATTGACGAAGAGGGAGATTTTAGAATTGCAAAAAAATTGGCAACGGTGGGACTTTGGTGTATCCAATGGCAACCTTTGCATCGTCCGCCAATGAAAACAGTGGTACAAATGCTTCAAGGAGAAGGGGACAAGTTAAAAGTACCAAGCAATCCTTTCGGACCTACAATTACAACAACTACAATTGGTAATATTGCTGTAGAACGTATGAATTTGGAGTTGGATGTGATTGAAGAATTAGATTAG 1758 0.3686 MICSHFTSSFMIVAITLMLILQLGNAHNIPSRGCPFDISCKHRNKILEIPAHPLPIKLIIDDINYTSQVLEAHDPENCLSRLVYSSIFPFRIHGAGYGHGWALGDHTNNSFNVSFFDCSSLGSLDSIADYQNGGTTQSGISCPIFIQRLNVNMVQSNLVFCTKLSQPVPPLILSDESLMGIRLNSISLSWSGTNLDKGCFKCKHKSKKKIILSAVGVIIGSTMLVLLFAIFKIYHYIKMNKEDHKRIENFLKDYRASKPTRFSYADLKRITHNFKDKLGEGAHGAVYKGKLSNEILVAVKILNNAEGDGKEFINEVGTMGKIHHLNVVRLLGFCADGFHRALVYDFFPNGSLEKFISPLNNKDNFLGWDKLEQIALGIANGIEYLHQGCDQRILHFDINPHNVLIDDNFTPKITDFGLAKICSKNQSIVSMTTAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTSGEENVQIEYPEWIHNLLEGGDIQIPIDEEGDFRIAKKLATVGLWCIQWQPLHRPPMKTVVQMLQGEGDKLKVPSNPFGPTITTTTIGNIAVERMNLELDVIEELD 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01008 585 PANTHER RUST RESISTANCE KINASE LR10-RELATED 238 560 IPR045874 GO:0004672
Trre2g01008 585 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Trre2g01008 585 Gene3D Phosphorylase Kinase; domain 1 245 346 - -
Trre2g01008 585 Pfam Protein kinase domain 274 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01008 585 SUPERFAMILY Protein kinase-like (PK-like) 252 543 IPR011009 -
Trre2g01008 585 FunFam serine/threonine-protein kinase PBS1-like 239 346 - -
Trre2g01008 585 FunFam PR5-like receptor kinase 347 554 - -
Trre2g01008 585 Gene3D Transferase(Phosphotransferase) domain 1 347 553 - -
Trre2g01008 585 ProSiteProfiles Protein kinase domain profile. 272 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01008 Trre-Chr2 7922001 7923885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01008 212 566 Receptor kinase-like Gene Family AT1G66910 45.856 1.27e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01008 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01008 - - tpra:123893290 696.427