Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01006 ATGATTTGCAGTCACAGTACCACTTCCTTCATGCTAGCAATGACATTAATACTAGTGCCGCTGCTAGGGAATCAACACGAACAGAATAACCCTTCGATTGGATGTCCTTTCAATCTATCTTGTACACATCATAACAACATGATTCTGGAACTACCTGCTCATCCGGTCCCTATAAAACTCCGCGTAAGTTACATTAACTACACATCGCAAGTACTCCAAGCACATCATCTTGAAAATTGTCTTCCACGACTCTTACTTCAGCAGCACAATTTCACTTCATCAATTTATCCTTTTCAGATTGTCTCTTCGACGCCTTCGCAATTTGATGATTTTACCAATATTAGTTTCTTTGATTGTTCTCCACTGCGACAACATCACCTGACAGACGACTATTTGTATTATGCAAATTACGAACAGGTGCAGCAGGACATGATCTATTGCCCAATTTATGTCGCAGCATTTTACGAAGATGTAGTTGAATTGAACCTTGTATCTTGCACCAAACTTCCTGAGCGAGATTTGCCTCTTATTCTTCCGGGAGATTCTCTGTATGGGATACAACAAAACTCAATGTTTCTGTCATGGTCAGAAACAAATCTTGATAAAGAATGCTTAGAATGTAAGCACAAATCAAAGAAGAAGACTATAACCATCATTTTGTCTTCTGCAGGTGTAATCATTGGCTCAACTGTGCTTGTTCTTTTATTTGGTGCCATTTTTCAAATATATAGCTATTTTAAGATGAAAGGCGAAGATCATGAAAGAATTGAAAACTTTTTGAAAGATTACAAAGCTTTAAAGCCAACTAGATTCTCTTATGCAGACTTAAAGAGAATTACACATAAATTTAAAGATAAGTTAGGCGAAGGGGCCCATGGAGCTGTTTACAAAGGTAAATTGTCGAACCAAATTTTGGTTGCTGTGAAGATTCTTAATAATGCAGAAGGAGATGGGAAGGAGTTCATAAATGAAGTTGGAACCATGGGCAAAATACACCATCTCAACGTGGTTCGTTTGCTTGGTTTCTGCGCAGATGGATTTCATCGTGCTTTGGTTTATGACTTTTTCCCAAATGGTTCGTTGGAGAAATTTATTTCGCCTTCGAACAACAAAGATAATTTCCTTGGATGGGATAAGTTACAACAAATTGCTCTAGGCATAGCAAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCTCATAATGTTTTGATAGATGACAATTTCACTCCCAAAATTACTGATTTTGGTTTGGCTAAGATGTGTTCGAAAAATCAAAGTACTGTATCCATGACTGCAGCAAAGGGGACATTAGGCTACATGGCACCCGAAGTTTTTTCAAGAAACTTCGGAAATGTCTCATATAAGTCTGATATATACAGTTATGGTATGTTGTTATTAGAGATGGTTGGAGGAAGAAAGAATACAAAAACAACTAGTAGCGATGAAAATGTTCAAGTTGAGTATCCAGAATGGATCCACAATTTGCTTGAAGGAGGAGATATACAAATTCCTGTTGATGAAGAGGGAGATTTCAGAATTGCAAAAAAATTGGCAACAGTGGGACTTTGGTGTATCCAATGGCACCCTTTGCATCGTCCGCCAATGAAAACTGTGGTACAAATGCTTCAAGGAGAGGGGGACAAGTTAAAAGTACCGTGCAATCCTTTCGGACCAACAACTACAACTAATACAATTACTAATATTGTTGGTGAATGTATGAATGTGGAGTTGGATGTAATTCAAGAATAA 1779 0.3772 MICSHSTTSFMLAMTLILVPLLGNQHEQNNPSIGCPFNLSCTHHNNMILELPAHPVPIKLRVSYINYTSQVLQAHHLENCLPRLLLQQHNFTSSIYPFQIVSSTPSQFDDFTNISFFDCSPLRQHHLTDDYLYYANYEQVQQDMIYCPIYVAAFYEDVVELNLVSCTKLPERDLPLILPGDSLYGIQQNSMFLSWSETNLDKECLECKHKSKKKTITIILSSAGVIIGSTVLVLLFGAIFQIYSYFKMKGEDHERIENFLKDYKALKPTRFSYADLKRITHKFKDKLGEGAHGAVYKGKLSNQILVAVKILNNAEGDGKEFINEVGTMGKIHHLNVVRLLGFCADGFHRALVYDFFPNGSLEKFISPSNNKDNFLGWDKLQQIALGIANGIEYLHQGCDQRILHFDINPHNVLIDDNFTPKITDFGLAKMCSKNQSTVSMTAAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTSSDENVQVEYPEWIHNLLEGGDIQIPVDEEGDFRIAKKLATVGLWCIQWHPLHRPPMKTVVQMLQGEGDKLKVPCNPFGPTTTTNTITNIVGECMNVELDVIQE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01006 592 Gene3D Transferase(Phosphotransferase) domain 1 356 561 - -
Trre2g01006 592 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Trre2g01006 592 ProSiteProfiles Protein kinase domain profile. 281 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01006 592 PANTHER RUST RESISTANCE KINASE LR10-RELATED 247 569 IPR045874 GO:0004672
Trre2g01006 592 FunFam PR5-like receptor kinase 356 564 - -
Trre2g01006 592 FunFam serine/threonine-protein kinase PBS1-like 249 355 - -
Trre2g01006 592 SUPERFAMILY Protein kinase-like (PK-like) 264 552 IPR011009 -
Trre2g01006 592 Pfam Protein kinase domain 283 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01006 592 Gene3D Phosphorylase Kinase; domain 1 255 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01006 Trre-Chr2 7910318 7912220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01006 224 565 Receptor kinase-like Gene Family AT1G66910 46.552 3.65e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01006 Pkinase 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01006 - - tpra:123893290 744.962