Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01005 ATGACCCAACAGCCTGTGGAAATCAACTACATAAACTACACAGTTCGAATAGTTGATCCCGGAATTGAAGAGGGGAATTGCTCCTCCGTTCCTCGCTATTTCTTAAGTACATCCAATTTCACAATTTCTTACACTTATGATGACTACCACATGTATCCATATCAAATCGACTATCAGTTTGGGCTCGGGTACGGGTACATAATATACTTAAACTGTAGCAAACCAGTGAAGGATGATCCTGGCTATGTGGACACATCTCCCTGCATCAACTGGGACTCCAAAAACTATGTTTATGCTTTTGCTGTCAAGAAATATTGGGAAGATGATTATATGGGATCCAATAATTACTTATCGGTTGGGAGATTAAAAGATTATTGCCAAGTGAAGCATGTTGCTATGTTATCATTATCAGATAGTTCTAATGGCAGTGTAAGAGATGATGTGCCAGATCGACCCCTTTCATACGAGCATATGCATGGAATGCTTCTCTATGGATTTGAGTTATCATGGATAAGCGGTGCTTGTAGAGATTCTTGCGACGATAATCAACGGTGCTATTTTAATCAAACTACTGCAGATTTTGAATGTTTTGAATCAACTGATTATTGCACTTATCCATTGGGAATTGAAGTCGCCAAAAGATGCGACCAAGTATCAAAGCAGCGCATATTAGTGGAAGATGTAATACTTGGCCTTGTTAAAGGAGTAGTACAAATATTTGGCATAACAAAAAGTTCTGAATCATCTGAGGCAGTTTTAGATTACAAAATTGCCATAGAGATTGGAAGAGTGACAGGAAGATATCTTTTGCCATTATTTATGTCTAGATTTGTCCTAGGCCTTGTGGTTTTCTTTGTGCTATTGATATATACGTGTCGCAAAAGGCATATATCGATGTATGAAAATATTGAAGTATTTCTTCGAGGGAGTACCTTGATGCCGATTAGGTATTCATACAAAGAAATAAAAACCATGACTAGAAGTTTTAGAGATAAGTTGGGTGAAGGAGGCTTTGGTGCTGTTTATAAAGGAAAGCTACGGAGCGGACCATTTGTGGCTATAAAGATGTTGAGTAAATCTAAGGGTAATGGACAGGATTTCATTAATGAAGTTGCAACCATAGGAAGAATACATCACACAAATGTAGTTCGACTTATTGGATTTTGTGTTGAGGGGTCTAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGCTCTCTTGATAAATATATTTCTGTTAAAGATGATGCTATCTCTTTAACTTCAATGAAAATGTATGAGATATCTCTTGGAGTAGCTCGTGGAATCGCTTATTTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCAAAACTCTATCCAAATGACAATAGTATTGTTACTTTAACTGCAGCTAGAGGAACACTTGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTATCCTACAAGGCTGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAAAAGAAATTCAAATCAATATGCAGATCGTTCAAGCGGATTTTTCTATCCAATTTGGATTTATGATCAATTGATTGAAGAAAGAGAGATTGAACTGGATGAACTTACTAGTGAGGAAATGATTAATGTGAAAAAGATGTTTATAACTGCGTTATGGTGTGTGCAATTAAAACCAAGTGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAGAACATCGAAATGCCTCCAAAACCTTCTCTATATCCAAATGAAACTTTTCAGAATGATCTTGAAGTAACCTCTGACGAAATTGAATCAGATACTGATGATGACTCTGTTAGTTTCTTGAAGGAAACTAACTCATAG 1941 0.3663 MTQQPVEINYINYTVRIVDPGIEEGNCSSVPRYFLSTSNFTISYTYDDYHMYPYQIDYQFGLGYGYIIYLNCSKPVKDDPGYVDTSPCINWDSKNYVYAFAVKKYWEDDYMGSNNYLSVGRLKDYCQVKHVAMLSLSDSSNGSVRDDVPDRPLSYEHMHGMLLYGFELSWISGACRDSCDDNQRCYFNQTTADFECFESTDYCTYPLGIEVAKRCDQVSKQRILVEDVILGLVKGVVQIFGITKSSESSEAVLDYKIAIEIGRVTGRYLLPLFMSRFVLGLVVFFVLLIYTCRKRHISMYENIEVFLRGSTLMPIRYSYKEIKTMTRSFRDKLGEGGFGAVYKGKLRSGPFVAIKMLSKSKGNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRALVYEFMPNGSLDKYISVKDDAISLTSMKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKKRNSNQYADRSSGFFYPIWIYDQLIEEREIELDELTSEEMINVKKMFITALWCVQLKPSDRPSMNKVIEMLEGNIENIEMPPKPSLYPNETFQNDLEVTSDEIESDTDDDSVSFLKETNS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01005 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Trre2g01005 646 ProSiteProfiles Protein kinase domain profile. 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01005 646 Pfam Protein kinase domain 331 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01005 646 FunFam PR5-like receptor kinase 402 609 - -
Trre2g01005 646 Gene3D Transferase(Phosphotransferase) domain 1 402 607 - -
Trre2g01005 646 Gene3D Phosphorylase Kinase; domain 1 307 401 - -
Trre2g01005 646 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Trre2g01005 646 MobiDBLite consensus disorder prediction 627 646 - -
Trre2g01005 646 SUPERFAMILY Protein kinase-like (PK-like) 312 598 IPR011009 -
Trre2g01005 646 SMART serkin_6 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01005 646 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 617 IPR045874 GO:0004672
Trre2g01005 646 FunFam serine/threonine-protein kinase PBS1-like 299 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01005 Trre-Chr2 7906185 7909624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01005 316 640 Receptor kinase-like Gene Family AT5G38280 51.205 1.24e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01005 Pkinase 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01005 - - tpra:123893228 829.32