Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01003 ATGTCACTGATCACAATAATCCTTTCACTGCTGCTGCTAGTGAGCCTTGCAAATGGTCTGAGTGATGCATCCATTAGATGTCCCTTCAAGCTCAACTGTACACATAACATGAAGATTCTTGAGCTTCCTACTCATCCAGTCCCTATGAAACTAATCATCAGGGACATTGATTATAGATACCAATGGTTATCTCTATCTGATCCCGGAAATTGTTTACCGAAACTCATCCTTGATTACAACTTTTCATCAATATTTCCTTTAAAGTCTTATGGAGAAAAAAATATTAGTTTCTTTGATTGTTCTTCAGTAGTACAACTCAGAAACAGCAATAATATGTACAGCGGTGCACAAGATATCAAATCTTGTCCAATTTATGTTGCTGACTCTGATCGCGATAGCATAGTTGAATCTGATCTTGTATACTGCATCAAACTGTTTGACCGCGTATCTTCATTCGATGCGGATAGTATTCAAGTCAACATAATCCCACTTTCATGGTCAGGAACAAATTTTGACATACGATGTTTGAAATGTGAACACAAATCAAAGAAGAAGATTACGCTCATTATTTTATCATCTGCAGGTGTAATCATCGGTTCAACTTTGCTAGTGTTTGCCCTCGGTGTTATTGTACAAATTCATCTCCATTTCAAAATGAAAGGCGAAGATCATACAAGAATCGAAAACTTTTTGAAGGATTACAAGGCTTTAAAGCCAACCAGATTCTCCTATGCTGACATAAAGAGAATCACAAATAAATTTAAGGATAAATTAGGCGAAGGAGCTCATGGAGCCGTTTACAAAGGTAAATTATCGAGCCAAATTTTGGTTGCTGTTAAGATGCTCAATAACACAAAGGGAGATGGGAAAGAGTTCATAAATGAAGTGGGAACTATGGGGAAAATTCACCATCTCAATGTTGTCCGTTTGCTTGGCTATTGTGCCGATGGATTTCACCGTGCTCTAGTCTATGACTTTTTCCCAAATGGTTCGTTGCAAAAATTCATTTTTCCTCCTAGCAACAAAGATAGTTTCCTTGGATGGGACAAGTTGCAGCAAATTGCTCTAGGCATAGCTAGTGGAATTGAATATCTTCATCAGGGTTGTGATGAAAGAATTCTTCACTTTGACATCAATCCTCATAATGTATTGATAGATGACAGTTTCATCCCAAAAATTACGGACTTTGGTTTGGCGAAGATATGCTCGAAAAATCAAAGTATTGTATCTATGACAGCAGCCCGAGGAACATTAGGATACATGGCACCTGAAGTCTTTTCTAGAAACTTCGGCAATGTCTCATATAAGTCTGATATATACAGCTATGGTATGTTGTTATTAGAGATTGTTGGAGGAAGAAAGAATACAAACACAACCACAAATGAAGAAAACTTTCAAGTTTTGTATCCAGATTGGATCCATAGTTTGCTCGAAGGAGGCGACATACAAATCCCTATAGATGAAGAGGGAGATTTTAGAATTGCGAAAAAATTGGCAATCGTTGGACTTTGGTGCATTCAGTGGCAACCTATGCACCGTCCGTCTATGAAAACTGTAATGCAAATGCTGCAAGGAGATGGAGACAAGTTAAAAGTTCCCTCCAACCCTTTTGGACCTACAACTTCAGCTATTACAACTACTAATATTGTTGCAGAACGTATAAACTTGGAGCTTGAAGTGATTGAAGAAATAGATTAG 1698 0.3769 MSLITIILSLLLLVSLANGLSDASIRCPFKLNCTHNMKILELPTHPVPMKLIIRDIDYRYQWLSLSDPGNCLPKLILDYNFSSIFPLKSYGEKNISFFDCSSVVQLRNSNNMYSGAQDIKSCPIYVADSDRDSIVESDLVYCIKLFDRVSSFDADSIQVNIIPLSWSGTNFDIRCLKCEHKSKKKITLIILSSAGVIIGSTLLVFALGVIVQIHLHFKMKGEDHTRIENFLKDYKALKPTRFSYADIKRITNKFKDKLGEGAHGAVYKGKLSSQILVAVKMLNNTKGDGKEFINEVGTMGKIHHLNVVRLLGYCADGFHRALVYDFFPNGSLQKFIFPPSNKDSFLGWDKLQQIALGIASGIEYLHQGCDERILHFDINPHNVLIDDSFIPKITDFGLAKICSKNQSIVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEIVGGRKNTNTTTNEENFQVLYPDWIHSLLEGGDIQIPIDEEGDFRIAKKLAIVGLWCIQWQPMHRPSMKTVMQMLQGDGDKLKVPSNPFGPTTSAITTTNIVAERINLELEVIEEID 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01003 565 ProSitePatterns Protein kinases ATP-binding region signature. 258 280 IPR017441 GO:0005524
Trre2g01003 565 Gene3D Transferase(Phosphotransferase) domain 1 327 533 - -
Trre2g01003 565 ProSiteProfiles Protein kinase domain profile. 252 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01003 565 FunFam serine/threonine-protein kinase PBS1-like 221 326 - -
Trre2g01003 565 Pfam Protein kinase domain 255 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01003 565 Gene3D Phosphorylase Kinase; domain 1 227 326 - -
Trre2g01003 565 SUPERFAMILY Protein kinase-like (PK-like) 234 523 IPR011009 -
Trre2g01003 565 PANTHER RUST RESISTANCE KINASE LR10-RELATED 223 541 IPR045874 GO:0004672
Trre2g01003 565 FunFam PR5-like receptor kinase 327 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01003 Trre-Chr2 7898027 7899817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01003 190 536 Receptor kinase-like Gene Family AT1G66910 45.658 7.91e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01003 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01003 - - mtr:25488766 758.059