Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01002 | ATGGCCAATTTTCACAATTTCCCCTTTCTACTAACTCTATTCTTTCTCTTATTAACAAAACCAGTAACATCCAAAAATCATTGCACTCAAAAATGTGGAAAGGTTCAAATTCAATTTCCATTTCATCTCAAAAACAACAATATGAATCAAACCAAACCTAAAGGTTTTGAATTATCATGTACAGATAAAGATGAAACTGTTCTAGAATTTCCCAAACTTTCACTCAAGCTTTTCATCAAACAGATAGACTACAAATCACAAAAATTCCAAATCTATGATCCAAAGAATTGTCTTGCAAGTCAATTATTAAAACTAGGAAATTCATCAGTTTCACCTTTTCTGTTACACTTCCATGAGTATAATATCCAGCGTAACGTTTCGTTCTTTCGTTGCAATTCGAATAACGGGTGTTCGATATTGCAACGTGATTCTGGTGGTGATTTTATTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGATGTTTTGAATGTTGGATGGATGGTTGAAGAATGGGAAGATGATGTTACAGAGAGTTTGATTATGGAATGGTCTAAACCTAATTGTAGTTTTTGTGAAAATCAAGGGCAAAAATGTAAATGGAAGAATGGTGGAAGAAATGGTGAAGTTGAATGTTTTGTTTGTAAATCAGATGGGATTGCAAGGTCTACTGTTCTTCTCATTACTGCTGGGGTTATAGTTGGATCAATGGTTTTGCTGCTATTGGCAAATGGACTACTTCGAATTTATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGGGCAATGAAACCTACAAGGTTCACTTATGCTGATATTAAGAGAATAACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCACATGGAGCAGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTTGTAGCTGTGAAGGTACTCAATGAAACACAGGGAGATGGAAACGATTTCATTAATGAAGTCGGAACCATGGGAAAAATTCATCATGTCAATGTCGTTCGTTTGCTCGGATTCTGCGCAGACGGATTCCACCGTGCTCTTGTCTATGATTTCTTTCCAAATGGGTCGTTACAGAATTTCTTGGCACCACCGGAGAACAAGGATGTTTTTCTCGGTTGGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCTAGAGGGATTGAGTATCTTCATGTTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCACACAATGTGTTAATAGATGATAATTTGAGTCCTAAAATTACTGACTTCGGACTTGCTAAATTGTGTCCGAAAAATCAAAGCACAGTTTCTATGACTGCAGCTAGAGGAACATTAGGATACATTGCACCAGAAGTTTTCTCGAGAAACTTTGGAAATGTTTCTTATAAATCTGATATTTATAGCTACGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGAAAGAATACTAATGTGTCAACCGAGGAAACATTCCATGTTTTGTATCCGGAATGGATTCATAATCTAATTGAAGGTAAAGACGTACAAGTTAATATTGAGGAAGAGGGAGATGTTAGAATTGCAAAAAAGCTCGCTCTTGTGGGACTTTGGTGTATTCAATGGAATCCAGTGGATCGGCCGTCTATGAAAACTGTGGTACAAATGCTTGAGGGTGAGGGAGAAAAATTAGTGGCACCTCCTACTCCTTTTGACTCTATTGGTGCTAATGGAACAAATGCAGTTGTTTCAGCTAGACATCTGAATTTCGAGTTAGAAGTTATTCCCGAAATTGAGTAA | 1803 | 0.3699 | MANFHNFPFLLTLFFLLLTKPVTSKNHCTQKCGKVQIQFPFHLKNNNMNQTKPKGFELSCTDKDETVLEFPKLSLKLFIKQIDYKSQKFQIYDPKNCLASQLLKLGNSSVSPFLLHFHEYNIQRNVSFFRCNSNNGCSILQRDSGGDFIDPELVSCRKVSDVLNVGWMVEEWEDDVTESLIMEWSKPNCSFCENQGQKCKWKNGGRNGEVECFVCKSDGIARSTVLLITAGVIVGSMVLLLLANGLLRIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGNDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENKDVFLGWEKLQQIALGVARGIEYLHVGCDHRILHFDINPHNVLIDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSTEETFHVLYPEWIHNLIEGKDVQVNIEEEGDVRIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGEGEKLVAPPTPFDSIGANGTNAVVSARHLNFELEVIPEIE | 600 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01002 | 600 | ProSiteProfiles | Protein kinase domain profile. | 288 | 566 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01002 | 600 | FunFam | S-receptor-like serine/threonine-protein kinase | 259 | 362 | - | - | |
Trre2g01002 | 600 | FunFam | PR5-like receptor kinase | 363 | 569 | - | - | |
Trre2g01002 | 600 | Pfam | Protein kinase domain | 291 | 556 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01002 | 600 | Gene3D | Phosphorylase Kinase; domain 1 | 263 | 362 | - | - | |
Trre2g01002 | 600 | SUPERFAMILY | Protein kinase-like (PK-like) | 270 | 559 | IPR011009 | - | |
Trre2g01002 | 600 | Gene3D | Transferase(Phosphotransferase) domain 1 | 363 | 566 | - | - | |
Trre2g01002 | 600 | ProSitePatterns | Protein kinases ATP-binding region signature. | 294 | 316 | IPR017441 | GO:0005524 | |
Trre2g01002 | 600 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 262 | 574 | IPR045874 | GO:0004672 | |
Trre2g01002 | 600 | Pfam | Wall-associated receptor kinase galacturonan-binding | 28 | 93 | IPR025287 | GO:0030247 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01002 | Trre-Chr2 | 7894666 | 7897219 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01002 | 185 | 571 | Receptor kinase-like Gene Family | AT1G66910 | 44.417 | 1.53e-105 | 331 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Trre2g01002 | Pkinase | 1.3e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01002 | - | - | gmx:100819302 | 873.618 |