Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01002 ATGGCCAATTTTCACAATTTCCCCTTTCTACTAACTCTATTCTTTCTCTTATTAACAAAACCAGTAACATCCAAAAATCATTGCACTCAAAAATGTGGAAAGGTTCAAATTCAATTTCCATTTCATCTCAAAAACAACAATATGAATCAAACCAAACCTAAAGGTTTTGAATTATCATGTACAGATAAAGATGAAACTGTTCTAGAATTTCCCAAACTTTCACTCAAGCTTTTCATCAAACAGATAGACTACAAATCACAAAAATTCCAAATCTATGATCCAAAGAATTGTCTTGCAAGTCAATTATTAAAACTAGGAAATTCATCAGTTTCACCTTTTCTGTTACACTTCCATGAGTATAATATCCAGCGTAACGTTTCGTTCTTTCGTTGCAATTCGAATAACGGGTGTTCGATATTGCAACGTGATTCTGGTGGTGATTTTATTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGATGTTTTGAATGTTGGATGGATGGTTGAAGAATGGGAAGATGATGTTACAGAGAGTTTGATTATGGAATGGTCTAAACCTAATTGTAGTTTTTGTGAAAATCAAGGGCAAAAATGTAAATGGAAGAATGGTGGAAGAAATGGTGAAGTTGAATGTTTTGTTTGTAAATCAGATGGGATTGCAAGGTCTACTGTTCTTCTCATTACTGCTGGGGTTATAGTTGGATCAATGGTTTTGCTGCTATTGGCAAATGGACTACTTCGAATTTATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGGGCAATGAAACCTACAAGGTTCACTTATGCTGATATTAAGAGAATAACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCACATGGAGCAGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTTGTAGCTGTGAAGGTACTCAATGAAACACAGGGAGATGGAAACGATTTCATTAATGAAGTCGGAACCATGGGAAAAATTCATCATGTCAATGTCGTTCGTTTGCTCGGATTCTGCGCAGACGGATTCCACCGTGCTCTTGTCTATGATTTCTTTCCAAATGGGTCGTTACAGAATTTCTTGGCACCACCGGAGAACAAGGATGTTTTTCTCGGTTGGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCTAGAGGGATTGAGTATCTTCATGTTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCACACAATGTGTTAATAGATGATAATTTGAGTCCTAAAATTACTGACTTCGGACTTGCTAAATTGTGTCCGAAAAATCAAAGCACAGTTTCTATGACTGCAGCTAGAGGAACATTAGGATACATTGCACCAGAAGTTTTCTCGAGAAACTTTGGAAATGTTTCTTATAAATCTGATATTTATAGCTACGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGAAAGAATACTAATGTGTCAACCGAGGAAACATTCCATGTTTTGTATCCGGAATGGATTCATAATCTAATTGAAGGTAAAGACGTACAAGTTAATATTGAGGAAGAGGGAGATGTTAGAATTGCAAAAAAGCTCGCTCTTGTGGGACTTTGGTGTATTCAATGGAATCCAGTGGATCGGCCGTCTATGAAAACTGTGGTACAAATGCTTGAGGGTGAGGGAGAAAAATTAGTGGCACCTCCTACTCCTTTTGACTCTATTGGTGCTAATGGAACAAATGCAGTTGTTTCAGCTAGACATCTGAATTTCGAGTTAGAAGTTATTCCCGAAATTGAGTAA 1803 0.3699 MANFHNFPFLLTLFFLLLTKPVTSKNHCTQKCGKVQIQFPFHLKNNNMNQTKPKGFELSCTDKDETVLEFPKLSLKLFIKQIDYKSQKFQIYDPKNCLASQLLKLGNSSVSPFLLHFHEYNIQRNVSFFRCNSNNGCSILQRDSGGDFIDPELVSCRKVSDVLNVGWMVEEWEDDVTESLIMEWSKPNCSFCENQGQKCKWKNGGRNGEVECFVCKSDGIARSTVLLITAGVIVGSMVLLLLANGLLRIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGNDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENKDVFLGWEKLQQIALGVARGIEYLHVGCDHRILHFDINPHNVLIDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSTEETFHVLYPEWIHNLIEGKDVQVNIEEEGDVRIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGEGEKLVAPPTPFDSIGANGTNAVVSARHLNFELEVIPEIE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01002 600 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01002 600 FunFam S-receptor-like serine/threonine-protein kinase 259 362 - -
Trre2g01002 600 FunFam PR5-like receptor kinase 363 569 - -
Trre2g01002 600 Pfam Protein kinase domain 291 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01002 600 Gene3D Phosphorylase Kinase; domain 1 263 362 - -
Trre2g01002 600 SUPERFAMILY Protein kinase-like (PK-like) 270 559 IPR011009 -
Trre2g01002 600 Gene3D Transferase(Phosphotransferase) domain 1 363 566 - -
Trre2g01002 600 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Trre2g01002 600 PANTHER RUST RESISTANCE KINASE LR10-RELATED 262 574 IPR045874 GO:0004672
Trre2g01002 600 Pfam Wall-associated receptor kinase galacturonan-binding 28 93 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01002 Trre-Chr2 7894666 7897219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01002 185 571 Receptor kinase-like Gene Family AT1G66910 44.417 1.53e-105 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01002 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01002 - - gmx:100819302 873.618