Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01001 ATGAAAAAACAAGCTCAATTTTCTTGTTCATCATATTCATATTTACAAACACTAGTATCAATATTTGCAACAATTATTCTCCTTTTCCATCAAAATTCTCTAGCTAAGCATCACCAACCATGTCCAACTTCATCATGCGGCAAAATCCACAACATATCATATCCATTTCGTCTCAAAACCGATCCAAACCACTGTGGCGACTCAAGGTACGAATTAGATTGCAACAAATATGGTGCATCGTTAACTATGTTCTCGGGGAAATATTACGTACAACACATTGATTACAAGAGATATACAATTTCATTAAGTGACGCTGGTGTAGTGGAAGATACTAATACTAGTTGCTCTTCGATACCACGGTACTTTCTATACGACCTTAGTTTTCATAATATTCTTTATGGTGAACAGAATTTTGGATCTGAACCGTTCAATTTGGATGCAAATCCAACAAAAGTCGTGTATTTCAATTGTTCTGATCCAGTAAACGATCCACGGTATGTTACCGTGGACACAAGTCGTTGTACCATACGAGGAAATAGTCATGTGTATGCTGTTTTGGAACAATCAATGTCCGATTTTCGTTTTGAGGATATTAAGGTTGGGTGTGAGTTTATGGTGGCTACCTTGACTAAGGAATGGCTTAAGGACATTGGGAAGGGGAACGTTTCTTATGATGAGATTCTTGAGTTGATTGTTGATGGATTTGAGGTTTCTTGGTTACCTGCGGTTTGTGAAAGTCGATGCGGAAAAGGGACAATTTGTAACGTTGTTGATGAAGAAAGCGGAGAAGTTCAATGTGGGAAGCGATTCTGTCATTATGCTTACCAAACAACCGATAAGTGCGAACTTCAACAGCAGATATTTGGTTATGTCCGAGCTTACCTTAGAGGCATTTTTATTGGACTTGGAAGTAGAATCACATTTAGCACAAGACAATTGGACAATCCAGTTGGACTAGAATATTTTGATGGAGGAATATTCATAGGAAGAAAGGTTATACCATATTTCATAGCAACCAGATTTCTATTTGGAGTTATAGTTCTACTTGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGCTAGAAAGCAATCTAAATCCAATTAGATATGAATACAAAGAAATCAAGAAGATGACAGGAGGTTTTAGAGTGAAATTAGGTCAAGGAGGTTTCGGTGCGGTTTACAAAGGAAAGCTAAGAAGTGGGCCGGATGTCGCAATAAAGATGTTGACAAAAACAAATGTTAATAATGGACAAGATTTTATTAATGAAGTTGCGACCATTGGAGAATACATCATGTTAATGTAG 1341 0.3654 MKKQAQFSCSSYSYLQTLVSIFATIILLFHQNSLAKHHQPCPTSSCGKIHNISYPFRLKTDPNHCGDSRYELDCNKYGASLTMFSGKYYVQHIDYKRYTISLSDAGVVEDTNTSCSSIPRYFLYDLSFHNILYGEQNFGSEPFNLDANPTKVVYFNCSDPVNDPRYVTVDTSRCTIRGNSHVYAVLEQSMSDFRFEDIKVGCEFMVATLTKEWLKDIGKGNVSYDEILELIVDGFEVSWLPAVCESRCGKGTICNVVDEESGEVQCGKRFCHYAYQTTDKCELQQQIFGYVRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGIFIGRKVIPYFIATRFLFGVIVLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKTNVNNGQDFINEVATIGEYIMLM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01001 446 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524
Trre2g01001 446 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 438 IPR044652 GO:0004672
Trre2g01001 446 Gene3D Phosphorylase Kinase; domain 1 368 443 - -
Trre2g01001 446 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Trre2g01001 446 SUPERFAMILY Protein kinase-like (PK-like) 377 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01001 Trre-Chr2 7890883 7892818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01001 11 441 Receptor kinase-like Gene Family AT5G38260 25.339 6.78e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g01001 GUB_WAK_bind 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01001 - - gmx:100820366 575.089