Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01000 ATGTATATAGAAAATAATTTCCTAACTGTTGGCTGCAACAGCTACGGCTATCTGAATAGTATTTACGATGGAGACACATACTCAACGGAATGCATAACAAGATGTAATGGAAATAAGAGGAAGATTCAAAATGGAACATGTTCCGGTATTGGTTGTTGTCAAGTGGATATTCCAACGGACATGAGGAATATAAGCATCAGAGCATCTTATTTCCCTAATTCAACCGGAAATTTAGGATGCAGCGTTTCTTTTATTGTCAAACATGGATTCTACAACTTTTCAACCATTGATCTACATAATTTCCGTTATGATAAGGTCCCTTTAATTCTTGATTGGAGCGTAAGGAGCACGAAATGTAATGCTACCAAGAGTGGAGTCAATTATGCTTGCAGGAACAATAGCTTTTGTGATGATGAAGACATTGGTTATGGCTACCGATGCAAATGCAAGGAAGGTTATGAAGGAAATCCATATCATCCGGATGGATGCAAAGATATTGATGAATGTAAGACATCTAAACATACATGTTTAGATGAAAATCATTGTCGCAATACCGATGGGTCTTACAAATGTTTTTGTCCTGAGGGTCAAATTGGAAAAGGAACAAAAGAAGGAGGGTGTCGTGGACGAAATGTACTTGCAAAGGTCTCTATTGGAGCAAGTGTAGGTTTCATTATTCTATTTGTGGGGAGTTCAGCATTGTACTTGATATATCAGAGAAGAAAACTCAAACAGTTAAAAGAGAAATTCTTTCAACAAAATGGTGGTTTTATTTTGTTAAGCCAACTCTCTAAAAGAGAAGACACATCAAGAACTGCTCAAATATTCAAAGAAGAGGAACTTAAGAAAGCCACCCAAAACTACGATGAAAACTTAATCATCGGTAGAGGAGGTTTTGGTACAGTCTTTAAGGGAATTTTACCTGACAACAAAGTCGTTGCTGTCAAAAAGTCCAAAATAATAGACGAAAATCAAATTGAGCAATTCATAAATGAGGTGGTTGTTCTGTCCCAAATAAATCATAGAAATGTTGTCAAACTCTTAGGATGTTGTTTGGAGACACAAGTTCCTTTACTAGTTTATGAATTTGTTAGCAACGGTACCCTTTTCGATTTCATGCACAACATAGATAATGCTAATAATGTAACGTGGAAAACATGTTTAAGGATAGCATCAGAGACCGCTGGAGCTTTATCGTATCTACATTCAGCTGCATCAATACCTATTATCCATAGAGACGTAAAAAGTACCAACATTCTCTTAGACGACAATTACACTGCAAAAGTGTCCGATTTCGGAGCATCAAGATTGGTTCCACTTGATCATACTGAAATAGCCACGGTGGTACAAGGAACTCTTGGATATTTAGATCCAGAGTATATGCAAACACATCAATTAACTGATAAAAGTGATGTTTATAGTTTTGGCGTAGTTCTTGTCGAGCTATTAACAGGAGAGAAACCTATTTCTTTTTATAGGCCAGAAGAGAGAAGAAACCTTTCTATTCACTTCCTATCTTGTTTACGAGAGAATCGCGTGTTGGAAGTTCTTCGATTTGGTATCTTGAATGATGATAACAAGGAGGAGATCAAAGAGGTTGCTATTCTTGCAGCAAAGTGCTTGAGACTTAAAGGAGAGGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATGAGATTAGGGGAAAAACACCCTTGGACTAAATTAGAAATAAATCTAGAGGAGACTCAATCCTTACTTCAAGAAACATCATTTAACACTAATTATGAAACTGGTGATAGCAGCAACCATGGATATAGCGGCTATGACAGCTTGAAAGTTCATGCACCAATGTCCTTGAATGATGGAAGATGA 1863 0.3709 MYIENNFLTVGCNSYGYLNSIYDGDTYSTECITRCNGNKRKIQNGTCSGIGCCQVDIPTDMRNISIRASYFPNSTGNLGCSVSFIVKHGFYNFSTIDLHNFRYDKVPLILDWSVRSTKCNATKSGVNYACRNNSFCDDEDIGYGYRCKCKEGYEGNPYHPDGCKDIDECKTSKHTCLDENHCRNTDGSYKCFCPEGQIGKGTKEGGCRGRNVLAKVSIGASVGFIILFVGSSALYLIYQRRKLKQLKEKFFQQNGGFILLSQLSKREDTSRTAQIFKEEELKKATQNYDENLIIGRGGFGTVFKGILPDNKVVAVKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETQVPLLVYEFVSNGTLFDFMHNIDNANNVTWKTCLRIASETAGALSYLHSAASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDHTEIATVVQGTLGYLDPEYMQTHQLTDKSDVYSFGVVLVELLTGEKPISFYRPEERRNLSIHFLSCLRENRVLEVLRFGILNDDNKEEIKEVAILAAKCLRLKGEERPSMKEVAMELEGMRLGEKHPWTKLEINLEETQSLLQETSFNTNYETGDSSNHGYSGYDSLKVHAPMSLNDGR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01000 620 FunFam Wall-associated receptor kinase 2 364 581 - -
Trre2g01000 620 ProSitePatterns Protein kinases ATP-binding region signature. 294 317 IPR017441 GO:0005524
Trre2g01000 620 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 182 193 IPR000152 -
Trre2g01000 620 Gene3D Transferase(Phosphotransferase) domain 1 364 579 - -
Trre2g01000 620 SUPERFAMILY EGF/Laminin 163 199 - -
Trre2g01000 620 ProSiteProfiles Protein kinase domain profile. 288 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01000 620 Gene3D Laminin 116 207 - -
Trre2g01000 620 CDD STKc_IRAK 294 561 - -
Trre2g01000 620 FunFam Wall-associated receptor kinase 2 258 363 - -
Trre2g01000 620 Pfam Protein kinase domain 290 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01000 620 CDD EGF_CA 165 200 - -
Trre2g01000 620 Pfam Calcium-binding EGF domain 165 200 IPR001881 GO:0005509
Trre2g01000 620 ProSitePatterns Calcium-binding EGF-like domain signature. 165 191 IPR018097 GO:0005509
Trre2g01000 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Trre2g01000 620 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 570 IPR045274 GO:0007166
Trre2g01000 620 SMART egf_5 168 208 IPR000742 -
Trre2g01000 620 SMART egf_5 118 164 IPR000742 -
Trre2g01000 620 SMART egfca_6 165 208 IPR001881 GO:0005509
Trre2g01000 620 FunFam Fibrillin 2 160 204 - -
Trre2g01000 620 ProSiteProfiles EGF-like domain profile. 165 203 IPR000742 -
Trre2g01000 620 SMART serkin_6 288 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01000 620 SUPERFAMILY Protein kinase-like (PK-like) 270 558 IPR011009 -
Trre2g01000 620 Gene3D Phosphorylase Kinase; domain 1 258 363 - -
Trre2g01000 620 Pfam Wall-associated kinase 45 150 IPR013695 GO:0004674|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01000 Trre-Chr2 7881183 7883632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01000 5 620 Receptor kinase-like Gene Family AT1G21230 47.393 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre2g01000 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01000 - - gmx:106795446 863.603