Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00999 ATGAAACAGAACACAAAGCTCACACAATTATGCACAATTTTAATCATTACAGTATCCATGGTAACAACAACATTTGCATCAAATGAATCATCTTCTACATCCCTACCCGGTTGCAAAAACACATGTGGAAATATCACAATTCCATATCCATTTGGTATAACAACTTCATCAATACCAAATCAAGGAGCTTGTTTCCTAGAGCCCAAATTTAATCTCCACTGTGAAGATGACACAAAATTAATCTTAGGGCACAATTTACAAGTTTTGAACATAAGCATCCTCGAAGGACAAGTTGAAATGTTGACTCGTGTTTCACGTTATTGTAATAACACGAATTATAGGCAATCAACTTTGAAGTTAAATTCTATCGGATTCAGTGTATCAAGCTCCGAAAATAAGTTCATTACGATTGGTTGTGACACTTACGGTTTTATAAATAGCATCTACAAAGGTGAAAAATATACAACGGGTTGCTTAACAAGATGCAATGGTAATCGAAATAAAATTGAAAATGGAACATGTTCGGGTATCGGTTGTTGTCAAGTTGATATTCCACATATGATGAAGAATATAAGTAGACATGTTGCGGAATTTCCTAATTCTACTGAACCTTATGGATGTAGTTATTCTTTTATTGTTAAAGATGGATCCTATAATTTTTCAGTTTCTCATTTGGATGATTTTCCTTATGAGAGACTTCCATTGATTGTTGATTGGAATGTTGGAAATAAAAGTTGTAAGGCTTCAATGGTTGAAGATGATTATGCTTGCAAGAACAATAGTGTTTGTTATGATAAGGACATTGATATTGGTTACCAATGTAAATGTAAGGAAGGTTATGAAGGAAACCCGTATCATCCAGATGGCTGCAAAGATATAGACGAATGTAAGACATTAAATAACACATGCATAAGTGAAAAACATTGTCGCAACACCGTAGGGAGTTATGAATGTTTTTGTCCAGATGGACAATCTGGAAATGGAACATTGACAGGAGGGTGTAATAGACGAGATCTTATTACCAAGATTGCAATTGGAACAAGTGCTGGACTCATTGTCCTATTTGTGGCGATTTCATCTCTTTACTTGACATACCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGTGGTTCCATTTTGCTACAACAATTATCTACAAGAGAAGACTCGTCGCAATCAGCTCAAATATTCACGGAAGAGGAGCTTAAAAAAGCCACCAAAAACTACGACGAAAGCTTAATCATCGGTAGAGGAGGTTTCGGTACAGTCTTCAAAGGAATTTTACCCGACAACAAAATCGTCGCTGTAAAAAAATCCAAAGTAATTGACGCAAATCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGCTTAGAGACAGAAGTTCCTTCCTTGGTTTACGAATTTGTTAGCAATGGGACACTTTTTGACTTCATACAAAGTACTAGAGATAAAGCAAATAATCCAACATGGAAAACGCGTTTAAGGATAGCAGCAGAAACAGCCGGAGCTTTAACATATCTACATTCGGCTGCTTCAATTCCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACACCGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTCGACCAAACCGAGATAGCAACAATGGTGCAAGGAACTCTAGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAAAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTAAAACAAGATAAAATTTTCGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAGAAGGAGATTAAGGAAGTTGCTATTCTTGCTGCAAGGTGTATGAGACTTAGAGGTGAAGAAAGACCTAGTATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGATTAATGGAGAGGCATCCTTGGAATGATACAGAACTAAATTTTGAGGAGAATCAACGTTTGCTTCATGAGGCATCTTGTAGCATTTATAATGAAACTGGTGATAGCTATAATCCAGGATATACTATTGGGTATGATAGCTTGAGGGATCAACCATTAATTCCCTTGGATGATGGAAGATGA 2250 0.3618 MKQNTKLTQLCTILIITVSMVTTTFASNESSSTSLPGCKNTCGNITIPYPFGITTSSIPNQGACFLEPKFNLHCEDDTKLILGHNLQVLNISILEGQVEMLTRVSRYCNNTNYRQSTLKLNSIGFSVSSSENKFITIGCDTYGFINSIYKGEKYTTGCLTRCNGNRNKIENGTCSGIGCCQVDIPHMMKNISRHVAEFPNSTEPYGCSYSFIVKDGSYNFSVSHLDDFPYERLPLIVDWNVGNKSCKASMVEDDYACKNNSVCYDKDIDIGYQCKCKEGYEGNPYHPDGCKDIDECKTLNNTCISEKHCRNTVGSYECFCPDGQSGNGTLTGGCNRRDLITKIAIGTSAGLIVLFVAISSLYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTREDSSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKVIDANQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTRDKANNPTWKTRLRIAAETAGALTYLHSAASIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEIKEVAILAARCMRLRGEERPSMKEVAMELDGIRLMERHPWNDTELNFEENQRLLHEASCSIYNETGDSYNPGYTIGYDSLRDQPLIPLDDGR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00999 749 Gene3D Phosphorylase Kinase; domain 1 381 490 - -
Trre2g00999 749 Gene3D Laminin 244 332 - -
Trre2g00999 749 Gene3D Transferase(Phosphotransferase) domain 1 491 709 - -
Trre2g00999 749 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Trre2g00999 749 ProSitePatterns Calcium-binding EGF-like domain signature. 292 318 IPR018097 GO:0005509
Trre2g00999 749 ProSiteProfiles Protein kinase domain profile. 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00999 749 FunFam Wall-associated receptor kinase 2 491 709 - -
Trre2g00999 749 CDD STKc_IRAK 421 689 - -
Trre2g00999 749 SMART serkin_6 415 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00999 749 SUPERFAMILY Protein kinase-like (PK-like) 396 686 IPR011009 -
Trre2g00999 749 Pfam Wall-associated receptor kinase galacturonan-binding 38 98 IPR025287 GO:0030247
Trre2g00999 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Trre2g00999 749 SMART egf_5 245 291 IPR000742 -
Trre2g00999 749 SMART egf_5 295 335 IPR000742 -
Trre2g00999 749 SUPERFAMILY EGF/Laminin 292 327 - -
Trre2g00999 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Trre2g00999 749 Pfam Protein kinase domain 417 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00999 749 Pfam Calcium-binding EGF domain 292 329 IPR001881 GO:0005509
Trre2g00999 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 698 IPR045274 GO:0007166
Trre2g00999 749 FunFam Fibrillin 2 287 331 - -
Trre2g00999 749 FunFam Wall-associated receptor kinase 2 385 490 - -
Trre2g00999 749 CDD EGF_CA 292 326 - -
Trre2g00999 749 SMART egfca_6 292 335 IPR001881 GO:0005509
Trre2g00999 749 SMART egfca_6 246 291 IPR001881 GO:0005509
Trre2g00999 749 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00999 Trre-Chr2 7874954 7878441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00999 38 749 Receptor kinase-like Gene Family AT1G21230 45.293 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre2g00999 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00999 - - gmx:106795446 966.452