Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00998 ATGAAACAGAACACAAAGCTCACACAACTATGCCAAATTTTAATGGTAACAATAGTATTTGCATCGGATGAATCCTTTTCTACATCCCTACCCGGTTGTAAATCCACATGTGGAGATGTCACAATTCCATTTCCATTTGGAATATCAAATTCATCGATACCAAATCAAGGACCATGTTATCTAGAGCACAAATTTGAACTCACATGCGAAAACGACACAAAATTACTTTGGAGCAATTTACAAGTTTTGAACATAAGCATCCTCGAAGGACAATATGAAATTTCGTTTTTCGTCTCTACATATTGTGATAGCAATCATTCCAATTATGCCTATTTATTCACTCCAAACGGGTTCAGCATATCTCCCAAAGAAAACAAGTTCTTAACAGTTGGTTGTGATAACTATGGTTATCTCAACAGCATTTACAACGGAGAAATATATTCGACCGGTTGCTTAACAAGATGTTATGGTAATCGAAAAAGAATTAAAAATGGAACATGTTCGGGTATTGGTTGTTGTCAAGTTGATGTTCCACCTATGATGAGGAATATAACTATACAAGCTTTTGATTTTGATAATTTAACGGAAAGTGTGGGGTGTGGCCGTTCATTTGTTGTTAAGAATGGATATTATAATTTTTCAGTTTCTGATTTGGACGATTTTCCTGATTCGGAGCTTCCATTGATTCTTGATTGGAGTGTTGGAAGTGAAAATTGTGATGTTTCAAAGGGAGAAGATGATTATGCTTGCAAGAAGAATAGTGATTGCTTTGATGAGGAAATTGATTTTGGTTACCAATGTAAATGCAAGAAAGGTTATGAAGGAAACCCGTATCATCCAGATGGCTGCAAAGACATCGACGAATGTAAGACATTAAATAACACATGCATAAGTGAAAAACATTGTCGCAACACCGTAGGGAGTTACGAATGCTTTTGTCCAGATGGACAATCTGGAAATGGAACATTGACAGGAGGGTGTAATAGACGAGATCTTATTAGCAAGATTGCGATTGGAAGTAGTGCTGGACTCATTGTCCTATTTGTGGCGATTTCAATTCTATATTTGACATACCAAAAAAGGAAACTGATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGTGGTTTTATTTTGCTACAACAACTATCTACAAGGGATGATACATCGCAATCAGCTCAAATATTCACAGAAGAGGAACTTAAGAAAGCTACCAAAAACTATGATGAAAGCTTAATTATCGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGTATTTTACCTGACAACAAAATTGTCGCGGTAAAAAAATCCAAAATAATTGATGCGGATCAAATTGAGCAATTCATTAATGAGGTAGTTGTTTTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTCTAGAGACAGAAGTTCCTTCCTTGGTTTATGAATTCGTTAGCAATGGTACACTTTTCGACTTCATACAAAGTACTAAAGATAAAGCAAATAATCCAACATGGAAAACACGTTTAAGGATAGCTGCTGAGACAGCTGGAGCTTTATCGTATCTACATTCAGCAGCGTCAATACCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACACCGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTTGATCAAACCGAGATAGCAACAATGGTACAAGGAACTCTTGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAAAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTAAAACAAGATAAAATTTTCGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAAAAGGAGATTAAGGAAGTTGCTATTCTTGCTGCAAGGTGTATGAGACTTAGAGGTGATGAGAGACCTAGTATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAATGGAGAAGCATCCTTGGAATGATACAGAACTAAATTTTGAGGAGAATCAACGTTTGCTTCATGAGGCATCTTGTAGCATTTATAGTGAAACTGGTGATAGCTATAATCTTGGAAATACTATTGGGTTTGATAGCTTGAGGGATCAACCATTGATTGCCTATGATGATGGAAGATGA 2229 0.362 MKQNTKLTQLCQILMVTIVFASDESFSTSLPGCKSTCGDVTIPFPFGISNSSIPNQGPCYLEHKFELTCENDTKLLWSNLQVLNISILEGQYEISFFVSTYCDSNHSNYAYLFTPNGFSISPKENKFLTVGCDNYGYLNSIYNGEIYSTGCLTRCYGNRKRIKNGTCSGIGCCQVDVPPMMRNITIQAFDFDNLTESVGCGRSFVVKNGYYNFSVSDLDDFPDSELPLILDWSVGSENCDVSKGEDDYACKKNSDCFDEEIDFGYQCKCKKGYEGNPYHPDGCKDIDECKTLNNTCISEKHCRNTVGSYECFCPDGQSGNGTLTGGCNRRDLISKIAIGSSAGLIVLFVAISILYLTYQKRKLIKLKQKFFQQNGGFILLQQLSTRDDTSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKIIDADQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTKDKANNPTWKTRLRIAAETAGALSYLHSAASIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEIKEVAILAARCMRLRGDERPSMKEVAMELDGIRLMEKHPWNDTELNFEENQRLLHEASCSIYSETGDSYNLGNTIGFDSLRDQPLIAYDDGR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00998 742 ProSitePatterns Calcium-binding EGF-like domain signature. 285 311 IPR018097 GO:0005509
Trre2g00998 742 Gene3D Phosphorylase Kinase; domain 1 378 483 - -
Trre2g00998 742 SUPERFAMILY EGF/Laminin 285 320 - -
Trre2g00998 742 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 302 313 IPR000152 -
Trre2g00998 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 690 IPR045274 GO:0007166
Trre2g00998 742 Pfam Protein kinase domain 410 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00998 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Trre2g00998 742 SMART egf_5 238 284 IPR000742 -
Trre2g00998 742 SMART egf_5 288 328 IPR000742 -
Trre2g00998 742 ProSiteProfiles Protein kinase domain profile. 408 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00998 742 CDD STKc_IRAK 414 682 - -
Trre2g00998 742 SMART egfca_6 285 328 IPR001881 GO:0005509
Trre2g00998 742 Gene3D Laminin 237 325 - -
Trre2g00998 742 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Trre2g00998 742 FunFam Wall-associated receptor kinase 2 378 483 - -
Trre2g00998 742 CDD EGF_CA 285 319 - -
Trre2g00998 742 Pfam Calcium-binding EGF domain 285 322 IPR001881 GO:0005509
Trre2g00998 742 SUPERFAMILY Protein kinase-like (PK-like) 389 679 IPR011009 -
Trre2g00998 742 ProSiteProfiles EGF-like domain profile. 285 323 IPR000742 -
Trre2g00998 742 FunFam Fibrillin 2 280 324 - -
Trre2g00998 742 SMART serkin_6 408 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00998 742 FunFam Wall-associated receptor kinase 2 484 702 - -
Trre2g00998 742 Gene3D Transferase(Phosphotransferase) domain 1 484 703 - -
Trre2g00998 742 Pfam Wall-associated kinase 165 270 IPR013695 GO:0004674|GO:0016020
Trre2g00998 742 Pfam Wall-associated receptor kinase galacturonan-binding 33 88 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00998 Trre-Chr2 7870413 7873250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00998 33 742 Receptor kinase-like Gene Family AT1G21230 45.679 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre2g00998 Pkinase 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00998 - - gsj:114381577 962.985