Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00997 ATGACATATGGACAATCTGGAAATGGAACATTGACAGGAGGGTGTAATAGACGAGATCTTATTACCAAGATTGCAATTGGAACAAGTGCTGGACTCATTGTCCTATTTGTGGCGATTTCATCTCTTTACTTGACATACCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGTGGTTCCATTTTGCTACAACAATTATCTACAAGAGAAGACTCGTCGCAATCAGCTCAAATATTCACGGAAGAGGAGCTTAAAAAAGCCACCAAAAACTACGACGAAAGCTTAATCATCGGTAGAGGAGGTTTCGGTACAGTCTTCAAAGGAATTTTACCCGACAACAAAATCGTCGCTGTAAAAAAATCCAAAGTAATTGACGCAAATCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGCTTAGAGACAGAAGTTCCTTCCTTGGTTTACGAATTTGTTAGCAATGGGACACTTTTTGACTTCATACAAAGTACTAGAGATAAAGCAAATAATCCAACATGGAAAACGCGTTTAAGGATAGCAGCAGAAACAGCCGGAGCTTTAACATATCTACATTCGGCTGCTTCAATTCCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACACCGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTCGACCAAACCGAGATAGCAACAATGGTGCAAGGAACTCTAGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAAAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTAAAACAAGATAAAATTTTCGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAGAAGGAGATTAAGGAAGTTGCTATTCTTGCTGCAAGGTGTATGAGACTTAGAGGTGAAGAAAGACCTAGTATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGATTAATGGAGAGGCATCCTTGGAATGATACAGAACTAAATTTTGAGGAGAATCAACGTTTGCTTCATGAGGCATCTTGTAGCATTTATAATGAAACTGGTGATAGCTATAATCCAGGATATACTATTGGGTATGATAGCTTGAGGGATCAACCATTAATTCCCTTGGATGATGGAAGATGA 1293 0.3782 MTYGQSGNGTLTGGCNRRDLITKIAIGTSAGLIVLFVAISSLYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTREDSSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKVIDANQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTRDKANNPTWKTRLRIAAETAGALTYLHSAASIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEIKEVAILAARCMRLRGEERPSMKEVAMELDGIRLMERHPWNDTELNFEENQRLLHEASCSIYNETGDSYNPGYTIGYDSLRDQPLIPLDDGR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00997 430 CDD STKc_IRAK 102 370 - -
Trre2g00997 430 SMART serkin_6 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00997 430 Pfam Protein kinase domain 98 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00997 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Trre2g00997 430 FunFam Wall-associated receptor kinase 2 172 390 - -
Trre2g00997 430 Gene3D Phosphorylase Kinase; domain 1 61 171 - -
Trre2g00997 430 SUPERFAMILY Protein kinase-like (PK-like) 77 367 IPR011009 -
Trre2g00997 430 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Trre2g00997 430 ProSiteProfiles Protein kinase domain profile. 96 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00997 430 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 37 379 IPR045274 GO:0007166
Trre2g00997 430 Gene3D Transferase(Phosphotransferase) domain 1 172 391 - -
Trre2g00997 430 FunFam Wall-associated receptor kinase 2 66 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00997 Trre-Chr2 7867298 7870280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00997 10 430 Receptor kinase-like Gene Family AT1G21250 53.428 1.47e-148 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre2g00997 Pkinase 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00997 - - tpra:123893257 704.901