Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00992 ATGGTAACAATAGTATATTCATCAAATGAATCCTTTTCAACATCCCTACCCGGTTGCAAAAGCACATGTGGAAATATCACAATTCCATATCCATTTGGTATACCAAATTCATCAAAACCAAATCAAGAAACTTGTTTCCTATCGAGAAAATTTAATGTCACGTGTGTAAATGACACAAAATTACTTTGGGGCAATGTACAAGTTAACAACATAAGCATCCCCGAAGGACAAATGGAAGTGTCATTTTCTATCTCCAGTTATTGTGATAACGTAACATGGATTAAACCCTCTTTAGACACTGCCAGTTTTAGAATATCCAGCAAAGAAAACAAGTTTGTAACGGTTGGCTGTGACAGTTACGGTTATCTCAACAGCGTTTTCAACAAAAAAACATATTCGACCGGTTGCTTAACAAGATGTTATGGTAATCGAGACGGAATTGAAAACGGAACATGTTCGGGTATCGGTTGTTGTCAAGTTGATATTCCACATATGATGAGGAATATAAGTGTTAAAGTTTCTGAATTTCCTGACTCCACGGAAAATACTGGGTGTAGCTCTTCTTTTATTGTTAAAAATGGTTTCTATAATTTTTCTCTTTCTCATTTGGATAATTTTCCTTCTAAGAAGCTTCCATTGATTCTTGATTGGAGTATTGGAAGTGAAAATTGTACGGTTTCAAATGCTTGCAAGAATAATAGTGAGTGCATTGATTTGGAAATTGATTCTGGTGGTTACCGGTGTAAATGTAAGGATCGTTATACAGGAAACCCGTATCATCCAGATGGCTGCACAGACATTGATGAATGTAAGACAAATAATACATGCATAACTAAAGAGAATTGTCACAATTTGGAAGGGAGTTATCAATGTATTTGTCCAGATAGGCAACCAGAAAATGCAACATTTGCAGGAGGGTGTAAAGATCATAGACAATTAGATCTTGTTACCAAGATTTCGATTGGAACAAGTGCTGGACTCATTGTCCTATTTGTGGCAATTTCATCTCTATATTTAACATGCCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGAGGTTCTATTTTGCTACAACAATTATCTACAGGAGAAGACTCATCGCAATCGGCTCATATATTCACGGAAGAGGAACTTAAAAAAGCCACCAAAAACTATGATGAAAGCTTAATCATTGGTAGAGGAGGTTTTGGCACAGTCTTCAAAGGAATTTTACCCGGCAACAAGATCGTTGCTGTAAAAAAATCCAAAATAATAGACGCAAGTCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATAAATCATAGGAACGTCGTAAAACTCTTAGGATGTTGTTTAGAAACAGAAGTTCCTTCCTTGGTTTACGAATTCGTTAGCCACGGTACACTTTTCGACTTCATACAAAGTACTAAAGACGAAGCAAATAATCCAACATGGAAAACACGTTTAAGGATAGCAGCAGAGACAGCCGGAGCTTTGTCGTATCTACATTCGGCTGCTGCAATACCAATTATTCATAGAGATGTTAAGAGCACCAACATTCTCTTGGATGAAAATTACACTGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAGATAGCAACAATGGTGCAAGGAACTCTCGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACTGAGAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTTTAACAGGGGACAAACCTCTTTCTTTTAATAGGCCGGAAGAGAGCATTAGTCTTGCTATGCACTTTTTGTCTTGTTTAAAACAAGATAAAATATTTGAAGCTATTCAAGTTGGAATTTTGAGTGATGATAACAAGAAGGACATTAAGGAGGTTGCTATTCTTGCTGCAAGGTGTTTGAGACTTAGAGGTGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATAAGGTTAACGGATAGGCATCCTTGGACTGATACAGAACAAAATTTTGAGGAAAATCAACGCTTACTTCATGAGGCATCTTCTAGCATTTATAATGAAATTGATGATGATAGCTCTAATCTTGGATATACCACTGTGTATGATAGCTTGAAAGATCAACCATTGATTGCCTTGGATGATGGAAGATGA 2181 0.3668 MVTIVYSSNESFSTSLPGCKSTCGNITIPYPFGIPNSSKPNQETCFLSRKFNVTCVNDTKLLWGNVQVNNISIPEGQMEVSFSISSYCDNVTWIKPSLDTASFRISSKENKFVTVGCDSYGYLNSVFNKKTYSTGCLTRCYGNRDGIENGTCSGIGCCQVDIPHMMRNISVKVSEFPDSTENTGCSSSFIVKNGFYNFSLSHLDNFPSKKLPLILDWSIGSENCTVSNACKNNSECIDLEIDSGGYRCKCKDRYTGNPYHPDGCTDIDECKTNNTCITKENCHNLEGSYQCICPDRQPENATFAGGCKDHRQLDLVTKISIGTSAGLIVLFVAISSLYLTCQKRKLIKLKQKFFQQNGGSILLQQLSTGEDSSQSAHIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPGNKIVAVKKSKIIDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSHGTLFDFIQSTKDEANNPTWKTRLRIAAETAGALSYLHSAAAIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLSFNRPEESISLAMHFLSCLKQDKIFEAIQVGILSDDNKKDIKEVAILAARCLRLRGDERPSMKEVAMELEGIRLTDRHPWTDTEQNFEENQRLLHEASSSIYNEIDDDSSNLGYTTVYDSLKDQPLIALDDGR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00992 726 Gene3D Laminin 266 300 - -
Trre2g00992 726 Pfam Wall-associated receptor kinase galacturonan-binding 19 80 IPR025287 GO:0030247
Trre2g00992 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Trre2g00992 726 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 675 IPR045274 GO:0007166
Trre2g00992 726 SUPERFAMILY EGF/Laminin 265 295 - -
Trre2g00992 726 ProSitePatterns Calcium-binding EGF-like domain signature. 266 291 IPR018097 GO:0005509
Trre2g00992 726 Pfam Protein kinase domain 393 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00992 726 CDD EGF_CA 266 295 - -
Trre2g00992 726 Gene3D Laminin 220 258 - -
Trre2g00992 726 Gene3D Phosphorylase Kinase; domain 1 359 466 - -
Trre2g00992 726 FunFam Wall-associated receptor kinase 2 361 466 - -
Trre2g00992 726 CDD EGF_CA 224 256 - -
Trre2g00992 726 SMART egfca_6 221 265 IPR001881 GO:0005509
Trre2g00992 726 SMART egfca_6 266 308 IPR001881 GO:0005509
Trre2g00992 726 Pfam Calcium-binding EGF domain 266 295 IPR001881 GO:0005509
Trre2g00992 726 Gene3D Transferase(Phosphotransferase) domain 1 467 690 - -
Trre2g00992 726 CDD STKc_IRAK 397 665 - -
Trre2g00992 726 FunFam Wall-associated receptor kinase 2 467 685 - -
Trre2g00992 726 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 282 293 IPR000152 -
Trre2g00992 726 SUPERFAMILY Protein kinase-like (PK-like) 372 672 IPR011009 -
Trre2g00992 726 ProSitePatterns Protein kinases ATP-binding region signature. 397 420 IPR017441 GO:0005524
Trre2g00992 726 ProSiteProfiles EGF-like domain profile. 220 265 IPR000742 -
Trre2g00992 726 SMART serkin_6 391 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00992 726 Pfam Wall-associated kinase 150 251 IPR013695 GO:0004674|GO:0016020
Trre2g00992 726 Pfam EGF-like domain 224 257 IPR000742 -
Trre2g00992 726 ProSiteProfiles Protein kinase domain profile. 391 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00992 Trre-Chr2 7825586 7833301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00992 19 726 Receptor kinase-like Gene Family AT1G21230 45.306 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre2g00992 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00992 - - gsj:114381577 913.294