Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00979 ATGACAGTAGCCAATAGTATTTTGATTACGCTATTGATTCTTGTGAATCTCTTGCTTATAAATAGCATCAGCGTTCATGATGACAAGTGCATAGAATATTCATCTTGTGGACCTGATGAACCTCTTGTTCGATTCCCCTTCCAACTCATTAAGGATTCATCACAAGATCAATGTGTTCATCCTGAGTTTTGCCTATCTTGTAATAAAAATAGCAAAACCATGATGGAGCTCTCTACCACTTCAGGTCCAATCACACTCTTAGTTACTGACATTATCTATGAACATCTGAATATTTACATTTCAGACCCACACTATTGCTTTACAAAATTGTTTCTCGAACGAAAACTTAACAGTTCATCATTTCTACCTTATTACCAATTTGATATGGAAACGTACAGAACAGTAGCCTTTTTCAATTGTTCGTCGGTTAAGAAACGACACTTGAGAAACGAAGAGAAGACAAATAATATTCATCCACAAGATATGACCACTTGTCCAATTTACGCTGCTAACTCTGACGATAGCGTCCTCAACTTGGACCTTGCTTCGTGTACCAAAATGTGTGAGGTCAATATTACTATTAATGCGGGTCTCCTGTCGACTAATAATATCATTTTGAGTTGGCCCAAAACAAAATGTGCAGTGTGTACAGAGAAAGGCATGAAATGTAGATGGAACAACAGCAGCACCAAAGGCGACATTGAATGTTATGACTGCCGCGGCAAGCGGAAAACTATCCACATTCCAAAATCTCTCATTTTCTCTGCAATTGGTTCAATTTTATTGGGGTTGGTCATCATTGCAATTACAATAATTTATCTACATTTCAAGGGAAAAAAAGAAGATCAAGTTAGAATTGATAAGTTTTTAGAGGATTATAAAGCACAAAAGCCTGCTAGATTTTCCTATGCTGATATAAAAAGAATCACGGACGGGTTTAAGGAAAAACTAGGAGAAGGAGCTCACGGAACAGTGTTCAAAGGAAAACTCTCTAGTGAGATTCTTGTGGCTGTGAAAGTGCTCAACAATTCACCGGGAGAAGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGAAAAATCCACCATATCAATGTTGTTCGTTTGCTTGGCTTCTGCGCAGATGGAATCCACCGGGCTCTTGTATACAATTTGTTTCCAAAAGGTTCGCTACAGAGCTTCATATTTCCACCGGATAACAAGGACCATTTTATGGGGTGGGAGAAGCTGCAACAAATTAGTCTTGGTATAGCAAAAGGAATCGAGTATCTTCATGAGGGTTGTAGTCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACACCTTCGCTCCAAAAATTTCAGATTTTGGTCTCGCCAAATTATGTTCCAAGAATGTTAGCGTGGTGTCCATGACGGCTGCTAGGGGAACCATGGGATATATGGCGCCTGAAGTTCTATCTCGAAATTTTGGAAATGTTTCTCTTAAATCTGATATTTATAGTTATGGTATGTTGTTGCTTGAAATGGTCGGAGGAAGAAAGAATGTGGACTCGTCATCTGCGGAAACAATTCATGTTTTATATCCCGAATGGATCCATAACTTATTGGAAGGGGACATACATATTCATATTGAAGATGAGGATGAAGTTAAAATTGCAAAAAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCAACCAATGAACCGTCCATCCATAAAAACTGTCATACAAATGTTGGAAACAGGAGACTACAACCAGTTAACTTTGCCACCTAATCCTTTTCATTCCACCACTTCCATTACCATTAGTGAAGGCTCTTTGGCAAGACGACCTTTCCAAATGGAAGTTGTTAGAACCCAGATTTTAGTAACAAATTTATAA 1884 0.3854 MTVANSILITLLILVNLLLINSISVHDDKCIEYSSCGPDEPLVRFPFQLIKDSSQDQCVHPEFCLSCNKNSKTMMELSTTSGPITLLVTDIIYEHLNIYISDPHYCFTKLFLERKLNSSSFLPYYQFDMETYRTVAFFNCSSVKKRHLRNEEKTNNIHPQDMTTCPIYAANSDDSVLNLDLASCTKMCEVNITINAGLLSTNNIILSWPKTKCAVCTEKGMKCRWNNSSTKGDIECYDCRGKRKTIHIPKSLIFSAIGSILLGLVIIAITIIYLHFKGKKEDQVRIDKFLEDYKAQKPARFSYADIKRITDGFKEKLGEGAHGTVFKGKLSSEILVAVKVLNNSPGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFPKGSLQSFIFPPDNKDHFMGWEKLQQISLGIAKGIEYLHEGCSHPILHFDINPHNVLLDDTFAPKISDFGLAKLCSKNVSVVSMTAARGTMGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDSSSAETIHVLYPEWIHNLLEGDIHIHIEDEDEVKIAKKLAIVGLWCIQWQPMNRPSIKTVIQMLETGDYNQLTLPPNPFHSTTSITISEGSLARRPFQMEVVRTQILVTNL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00979 627 Gene3D Transferase(Phosphotransferase) domain 1 386 589 - -
Trre2g00979 627 ProSiteProfiles Protein kinase domain profile. 311 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00979 627 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Trre2g00979 627 FunFam serine/threonine-protein kinase PBS1-like 279 385 - -
Trre2g00979 627 Gene3D Phosphorylase Kinase; domain 1 285 385 - -
Trre2g00979 627 PANTHER RUST RESISTANCE KINASE LR10-RELATED 283 598 IPR045874 GO:0004672
Trre2g00979 627 SUPERFAMILY Protein kinase-like (PK-like) 295 581 IPR011009 -
Trre2g00979 627 FunFam PR5-like receptor kinase 386 591 - -
Trre2g00979 627 Pfam Protein kinase domain 314 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00979 627 Pfam Wall-associated receptor kinase galacturonan-binding 32 102 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00979 Trre-Chr2 7739706 7741693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00979 8 607 Receptor kinase-like Gene Family AT1G66910 33.076 6.56e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00979 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00979 - - gmx:100811907 785.023