Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00978 ATGGCAGGATCACATTGTTTCATCACTCTACTGATTCTTCTCCTGCTGATCAATAGCAGCAGCAGTCATACTCATGATGAATGCAGAGAATCATCTTGTGGACCTGACCAACCAATTATTCGATTCCCATTTCAACTCGCGAAAGACTCACAGGATCAATGTGTTAATCCTGCATTTTGCCTTTATTGTACTCAAAATAACAATACCATGATTGTGCTCTCTACCATTTCAGGTGCAATTCAATTCTTTGTTACTGAAATTAACTACATATTTGAAACTATTTCAATTTCGGACCCAGACAATTGCCTTCCGAAAAAGTTTCTGGAACTGAAACCTAATCGTACATCATTTCTACCATACCGATTTTATATCGAATCAGAAAACACACTGGCCTTCTTCAACTGCTCGTCAGTTGGGAAACGACACTTGAGAAACGAAAATCAGATATTTGAAAATTCACAAGATATAACCTCTTGTCCAATTTTCGATTCTTATATTGACGAAAGTGTCCTCAAATTGGACCTTGTTTCATGTACCAAGATGTTTGAAGTCAAATACTCTATTAATCCAAATCGTCTGTCGGATAATAGGCTCATGTTGTCTTGGCCCAAACCAAATTGTACAGAGTGTGAAGCGAATAGCAAGGAATGCAGATGGAAAAATAACAGCACCAAAGGTGAAATTGAATGTTTTGACTGCAAGGGGAAACGAAAAACTATCCACATTCCAAAATATATTATTTTCCCTGCTATAGGTTCAATTATATTAGGGTTGGTCATCATTGCATTTACAAAGATTTACCAACATTTTAGAGAGAAAAAAGAAGATCAAGAATAA 837 0.3632 MAGSHCFITLLILLLLINSSSSHTHDECRESSCGPDQPIIRFPFQLAKDSQDQCVNPAFCLYCTQNNNTMIVLSTISGAIQFFVTEINYIFETISISDPDNCLPKKFLELKPNRTSFLPYRFYIESENTLAFFNCSSVGKRHLRNENQIFENSQDITSCPIFDSYIDESVLKLDLVSCTKMFEVKYSINPNRLSDNRLMLSWPKPNCTECEANSKECRWKNNSTKGEIECFDCKGKRKTIHIPKYIIFPAIGSIILGLVIIAFTKIYQHFREKKEDQE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00978 278 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 268 IPR046948 -
Trre2g00978 278 Pfam Wall-associated receptor kinase galacturonan-binding 28 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00978 Trre-Chr2 7731746 7733701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00978 21 231 C3H Transcription Factor Family AT2G46495 29.954 2.98e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00978 - - mtr:25482287 335.109