Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00973 ATGGCCGAAGCACATACTACTACCATGATCACACTACTGCTTCTTCTACTGTTTATCAACAGTGGAAGCAGTCACGACGAGTGCAGAACCGTTACTGAACCATTGTCTTGTGGACCTAACGAACCACTTATTAGTTTTCCCTTCCAACTCGTTAAGGAATCATCACAGGATCTATGTGTTCGTCCGGAATTTTGCCTATATTGTACTCAAAATAACAAAACCATGATTGTGCTCTCTACCACTACAGGTCTAATTAACTTCATTGTCGATAGAATTATCTACGAAGAATACTTTATTTCAATTTCTGATCCAGAGAATTGCCTTCCGAATAAGTTTTTAAAACTTAATAATTCATCATTTTTACCATACCGGTTTTATTCACTGTTCGAAACAACACTTTCCTTCTTCAATTGCTCTTCATCTAGGAAACGACACTTGAGAAACAGAGAACAGACTTATTTAAATTCACAAGATATAAGCACGTGTCCAATTTACGCTTCTAATTCCCAAGAGAGTGTCCTCACATTGGACCTTGTATCGTGTACAAAGATGTTCGATGTTGAAATGTCCACCGTGGGAGATGAATTGTCGTATAATCAAATGAGTTTGAGTTGGCCCAAAACATATTGTACAGAGTGTGAAGCGAAAGGCATGAAATGCAAATGGAAGAACAATGGCACCAAAGGCGAAACTGAATGTTTTGATTGCAACAATAAACGGAAAACAATTCAAATTCCAAATTCTCTTATATATGCTTCTACAGGTTCAATTTTTTCGGGGCTGGTTCTCATTGCATTATTTAAGATACATCTCTATTTTAGAGAAAAAGAAGAGGATCAAATTCAAGTTGATAAATTTTTAGAGGATTATAAAGCACAAAAGCCTGCTAGATTTTCATATGCTGATATAAAAAGAATCACGGGTGGGTTTAAGGAAAAGCTTGGAGAAGGAGCTCACGGAACTGTGTACAAAGGAAAGCTCTCAAGCGAGATACTCGTGGCTGTAAAAATGCTCAACAATACAGCGGGAGAAGGAAAAGAGTTCATCAATGAAGTCGGAATTATGGGCAAAATTCACCACATCAACGTTGTTCGCTTGCTTGGTTTTTGTGCAGATGGTATCCACCGTGCTCTTGTTTACAATTTTTTTCCAAATGGTTCGCTACAAAGTTTCATATTCCCACCCGATAACAAAGACCATTTCATGGGGTGGGAGAAGCTACAACAAATCAGTATTGGTATAGCCGAAGGAATTGAATATCTTCATCAGGGTTGTAACCATCCAATCATTCACTTGGACATCAACCCTCACAATGTTTTGTTAGATTGCTCGTTCACTCCAAAAATTTCAGATTTCGGTCTCGCCAAATTATGTTCCAAGAATCTTAGTGTTGTGTCCATGACAGCTGCTAAGGGAACCTTGGGATATATGGCTCCTGAAGTTCTATCAAGAAATTTTGGGAATGTGTCACTTAAGTCAGATATTTACAGTTACGGAATGTTGTTGCTAGAAATGGTTGGAGGGAGAAAGAATGTAGACATGTCGTCTGCAGAAGCTTGTAATGTGTTATATCCAGAATGGATTCATAACTTATTAGAAGGCGATGTACATATTCATATTGAGGATGAAGGTGATGTTAAAATTGCAAATAAACTTGCAATTCTCGGACTTAGGTGCATTCAATGGCAACCAATAAATCGTCCATCGATAAAATCTGTTGTGCAAATGTTGAAAACCGGAGAAGATATGCAGTTAATGGTGCCTCCCAATCCTTTTCGCTCAATGACTTCAATGACCAATAATGATCGATGCACTTTGGCAAGAACAACTTTCCAAATGGAAGTGATTCATGAATAA 1857 0.3791 MAEAHTTTMITLLLLLLFINSGSSHDECRTVTEPLSCGPNEPLISFPFQLVKESSQDLCVRPEFCLYCTQNNKTMIVLSTTTGLINFIVDRIIYEEYFISISDPENCLPNKFLKLNNSSFLPYRFYSLFETTLSFFNCSSSRKRHLRNREQTYLNSQDISTCPIYASNSQESVLTLDLVSCTKMFDVEMSTVGDELSYNQMSLSWPKTYCTECEAKGMKCKWKNNGTKGETECFDCNNKRKTIQIPNSLIYASTGSIFSGLVLIALFKIHLYFREKEEDQIQVDKFLEDYKAQKPARFSYADIKRITGGFKEKLGEGAHGTVYKGKLSSEILVAVKMLNNTAGEGKEFINEVGIMGKIHHINVVRLLGFCADGIHRALVYNFFPNGSLQSFIFPPDNKDHFMGWEKLQQISIGIAEGIEYLHQGCNHPIIHLDINPHNVLLDCSFTPKISDFGLAKLCSKNLSVVSMTAAKGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDMSSAEACNVLYPEWIHNLLEGDVHIHIEDEGDVKIANKLAILGLRCIQWQPINRPSIKSVVQMLKTGEDMQLMVPPNPFRSMTSMTNNDRCTLARTTFQMEVIHE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00973 618 FunFam S-receptor-like serine/threonine-protein kinase 276 382 - -
Trre2g00973 618 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Trre2g00973 618 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
Trre2g00973 618 Gene3D Transferase(Phosphotransferase) domain 1 383 587 - -
Trre2g00973 618 FunFam PR5-like receptor kinase 383 589 - -
Trre2g00973 618 ProSiteProfiles Protein kinase domain profile. 308 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00973 618 PANTHER RUST RESISTANCE KINASE LR10-RELATED 280 597 IPR045874 GO:0004672
Trre2g00973 618 SMART serkin_6 308 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00973 618 Gene3D Phosphorylase Kinase; domain 1 281 382 - -
Trre2g00973 618 Pfam Wall-associated receptor kinase galacturonan-binding 36 103 IPR025287 GO:0030247
Trre2g00973 618 Pfam Protein tyrosine and serine/threonine kinase 310 577 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00973 Trre-Chr2 7709028 7710964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00973 273 600 Receptor kinase-like Gene Family AT1G66980 46.291 2.97e-89 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00973 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00973 - - gmx:100811907 809.29