Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00971 ATGGCATTGGTAGGAGCAAGTAGCTTGATCACCCTGCTGCTTCTACTACTACTTTTCCATCACGGCAGCAGTCATGACAAATACTGCAGAGAAATGTCTTGTGGACCTGATGAACCGATTGTTCAATTTCCCTTCCAACTCGTTAAGGAATCGTCACAAGATCGATGTGTTTATCCTGAGTTTTGCCTATATTGTACTCCAAACAAGAACACCATGATGGTACTCTCTACTACTTCAGGTCCAATCAAATTCCTTGTCTATGCCATAGACTATGAATCGAACCGGATGTCAATCTCGGACCCAGATAATTGCATTCCCAAAAAGTTTTTGAAACTTATGAATTCATCGTTTCTACCTTACCGATTTTATACAGATTCAATAACAAAACTTTCTATCTTCAATTGTTCTTCGGTTAAGTATCGACACCTGAGAAATGACGATCAATCATCCCTAATGTCACAAGACATGATCACCTGTCCAATTTACATTTCTAATTCCTACCACAGTGTGGTCATGTTGGACCTTGTATCGTGTACCAAGATGTTCGATGTTTCATTCATATCCTTGCAACAATATTGCCCGCCTTATCATTTTCTCAGTTTGAGTTGGCCCAAACAAAATTGTACAGAGTGCGAAGCAAAAGGCATGAAATGCAAATGGAAGAACAACGGCACAAAAGGTGAAACTCAATGTTTTGATTGTAAGAACAAACGGAAAACAATTCAAATTCCAAAATCTCTTATATACATCTCAGCAGGTTCGATTCTTATGGGTCTGGTTCTCATCGCATTATTTAAGATACATCTATATTTTAGAAAGAAAGAAGAGGATCAAGTTAGAGTTGATAAGTTCTTAGAGGATTATAGATCACAAAAGCCAACTAGATTTTCATATGCTGACATAAAAAGAATTACGAATGGATTTAAGGAAAAACTTGGAGAAGGAGCTCACGGAACTGTGTTCAAAGGAAAGCTCTCAAGCGAGATACTTGTGGCTGTGAAAATGCTCAACAATACAGCAGGAGAAGGAAAAGAGTTCATCAATGAAGTCGGAATTATGGGTAAAATTCACCACATCAATGTTGTTCGCTTGCTTGGTTTCTGTGCCGATGGAATCCACCGTGCTCTTGTCTACAATTTTTTTCCAAATGGTTCGCTACAAAGTTTCATATTTCCACCCGATAACAAAGACAACTTCATTGGATGGGAGAAGCTGCAACAAATTGCCATTGGTATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTGTAACAATCCAATCATTCACTTTGACATCAACCCTCACAATATTTTGCTAGATGACTCCTTCACTCCAAAAATCTCAGATTTCGGTCTCGCCAAATTATGTTCAAAGAATCTTAGTGTTGTTTCCATGACAGCTGCTAAGGGAACCTTGGGATACATGGCGCCTGAAGTTCTATCAAGAAATTTTGGAAATGTGTCTCTTAAGTCAGATATTTACAGTTACGGAATGTTGTTGCTTGAAATGGTTGGAGGGAGAAAGAGTGTAGACATGTCGTCGTCTGCAGAAGCTTGTAATGTGTTATATCCAGAATGGATCCATAACTTATTGGAAGGAGATGTACATATTCATATTGAGGATGAAAATGATGTTAAAATTGCAAAGAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCTACCAATGAACCGTCCGTCGATAAAAAATGTTGTGCAAATGTTGGAAACCGGAGAGGATATCCAATTAATTGTGCCTCCTAATCCTTTTCGCTCGACATCTTCCATGACCGCTAATGATGAATGCACTTTGGCCAGAAGTTTCCAAATGGAAGTCATTCAAGAATAA 1851 0.3852 MALVGASSLITLLLLLLLFHHGSSHDKYCREMSCGPDEPIVQFPFQLVKESSQDRCVYPEFCLYCTPNKNTMMVLSTTSGPIKFLVYAIDYESNRMSISDPDNCIPKKFLKLMNSSFLPYRFYTDSITKLSIFNCSSVKYRHLRNDDQSSLMSQDMITCPIYISNSYHSVVMLDLVSCTKMFDVSFISLQQYCPPYHFLSLSWPKQNCTECEAKGMKCKWKNNGTKGETQCFDCKNKRKTIQIPKSLIYISAGSILMGLVLIALFKIHLYFRKKEEDQVRVDKFLEDYRSQKPTRFSYADIKRITNGFKEKLGEGAHGTVFKGKLSSEILVAVKMLNNTAGEGKEFINEVGIMGKIHHINVVRLLGFCADGIHRALVYNFFPNGSLQSFIFPPDNKDNFIGWEKLQQIAIGIAKGIEYLHQGCNNPIIHFDINPHNILLDDSFTPKISDFGLAKLCSKNLSVVSMTAAKGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKSVDMSSSAEACNVLYPEWIHNLLEGDVHIHIEDENDVKIAKKLAIVGLWCIQWLPMNRPSIKNVVQMLETGEDIQLIVPPNPFRSTSSMTANDECTLARSFQMEVIQE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00971 616 Pfam Wall-associated receptor kinase galacturonan-binding 29 100 IPR025287 GO:0030247
Trre2g00971 616 FunFam PR5-like receptor kinase 381 587 - -
Trre2g00971 616 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Trre2g00971 616 FunFam serine/threonine-protein kinase PBS1-like 273 380 - -
Trre2g00971 616 Gene3D Transferase(Phosphotransferase) domain 1 381 585 - -
Trre2g00971 616 Pfam Protein kinase domain 309 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00971 616 Gene3D Phosphorylase Kinase; domain 1 279 380 - -
Trre2g00971 616 ProSiteProfiles Protein kinase domain profile. 306 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00971 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 595 IPR045874 GO:0004672
Trre2g00971 616 SUPERFAMILY Protein kinase-like (PK-like) 288 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00971 Trre-Chr2 7703417 7705351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00971 33 590 Receptor kinase-like Gene Family AT1G66910 32.619 3.12e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00971 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00971 - - gmx:100811907 814.298