Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00970 ATGTGGTGGATGAGAATGATACTGCTACTACTACTACTATTGCTGCCGTTTACCTGCCGTGCTAGTACTGAACATGCATGTCCACCTTCATCTTGTGGCGAAATTTCTAACATAAGTTACCCATTTCGATTAAAAGATGACCCAATTCATTGCGGGGATAGAAGGTATGAACTATCATGCGAAAATAATGTGACAACTTTATATTTATTCTCTTCAAAATATCATGTGAAGTCCATCAATTACAATAACTTCACCATCAGATTGGTTGATTCTGGAATTCAACAAGATAATTGCTCTTCACTTCCTCTCAATTCCTTATCTCAATCTAATTTCTGTGTTAGATACAATTATATCGATAAATATTGCACGGATCCATACCAACCGGTACAAAATCTTCAAGAACTTCTTTTTCAGCATATAGTATACTTGAATTGTAGCCATCAAGTTACTAACAATCATAAATATGTCGACACTGTTCCTTGCGTCGATCGAAACTCAAAAGAGTATTATATTTATGCTATGGCTGGTGATTTAATTGCTGATGATTTTCAAGTTGGTTGTCACGTTGAATTAGTGGCTCCTACATCTTCTTGGTTGGGAAATTTGCAAGAAAATGAAATAGTTTCTTATGATGAAATGCACAAGGTGTTGGTGTATGGATTTGAGATTACATGGTTGCGTCATATGTGTCAAAAAAGTTGTGGAGATACAAGGTCCTGTTCATTCAACACTACCACCGAGAAAATTCAATGCGATCACTTCTGCCGCAATTTCTTATCGGGAGGTTGGACTACTCGTTGTGGCCGATGGTCCCAGCTGAGTTATTACGCTAAAGATACTATCATAGCTGTCAGGATAGGATTAATTGAAATGATAAAAGGACCAAACCAAATATATGAAGGTCAAACTGAGTATAAAGTAGGATTGGCAACAGGACACTATGTTCTACCATCATTCTTGGCAGGTAGATATCTGTTTGGGATGACATTATTTATTGCCTTGTTAATATACAAATGGAGGAAAAGGCATTTGTCAATGTTTGAATATATTGAAATATATCTACAACAACAAAACAATCTCATGCCCATTGGATATTCATACAAAGAAATCAAGAAAATGGCTAAAGGTTTCAAAGACAAGTTAGGTGAAGGAGGTTTCGGCACTGTGTTTAAAGGGAACCTTCGCAGTGGCCCTTGTGTTGCAATCAAGATGTTGGGTAAGTCGAAAGGTAATGGGCAAGACTTTATTAGTGAAGTAGCAACTATCGGAAGAATACATCATTTGAATGTGGTTCAGTTAATTGGATTTTGTGCTGAGGGATCAAAACGTGCTCTCATTTATGATTTCATGCCTAATGGATCTCTTGACAAATTTATTTTCTCTAAAGAAGGAAGCGTAAATATAAGCTACGACCAAATTTTTGACATATCGATTGGAGTAGCTCGTGGGATTGCTTATCTTCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCTCATAACATCCTTCTTGACAAAAACTTCACCCCAAAAGTCTCTGACTTTGGACTAGCTAAGTTATATCCCGTACAAAATAGCATTATCACAATGACTGCAGCAAGAGGTACAATTGGATATATGGCTCCAGAGTTATTCTACAAAAATCTTGGTGGTGTGTCATATAAGGCTGATGTTTATAGCTTTGGTATGCTATTGATGGAGATGGCAGGTAGAAGGAAAAACCTTAATGCCCATGCGGAGCATTCGAGCCAGCTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGACGGAGACATAGAAATCGAAGATACCACCGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTCGCACTTTGGTGTATACAATTAAAACCAAATGATCGTCCCACAATGAGCAAAGTAGTGGAAATGCTCGAAGGAGATGTTGAAAGCCTTGAAATACCCCCAAAGCCACTCCTTTATCCACATGAAACAGTTGTAGATGATCAAAGAACTAACTTTGACGAAACAATATCGAGTGATTACACTAGTTCTTATGATTCTGGGGAAATAGTAAATGATTCTCTTATAGAGAATATTGATTGA 2106 0.3689 MWWMRMILLLLLLLLPFTCRASTEHACPPSSCGEISNISYPFRLKDDPIHCGDRRYELSCENNVTTLYLFSSKYHVKSINYNNFTIRLVDSGIQQDNCSSLPLNSLSQSNFCVRYNYIDKYCTDPYQPVQNLQELLFQHIVYLNCSHQVTNNHKYVDTVPCVDRNSKEYYIYAMAGDLIADDFQVGCHVELVAPTSSWLGNLQENEIVSYDEMHKVLVYGFEITWLRHMCQKSCGDTRSCSFNTTTEKIQCDHFCRNFLSGGWTTRCGRWSQLSYYAKDTIIAVRIGLIEMIKGPNQIYEGQTEYKVGLATGHYVLPSFLAGRYLFGMTLFIALLIYKWRKRHLSMFEYIEIYLQQQNNLMPIGYSYKEIKKMAKGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNGQDFISEVATIGRIHHLNVVQLIGFCAEGSKRALIYDFMPNGSLDKFIFSKEGSVNISYDQIFDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDKNFTPKVSDFGLAKLYPVQNSIITMTAARGTIGYMAPELFYKNLGGVSYKADVYSFGMLLMEMAGRRKNLNAHAEHSSQLYFPLWIYDQVEKDGDIEIEDTTEEEKKIVKKMIIVALWCIQLKPNDRPTMSKVVEMLEGDVESLEIPPKPLLYPHETVVDDQRTNFDETISSDYTSSYDSGEIVNDSLIENID 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00970 701 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Trre2g00970 701 FunFam serine/threonine-protein kinase PBS1-like 348 449 - -
Trre2g00970 701 PANTHER RUST RESISTANCE KINASE LR10-RELATED 350 666 IPR045874 GO:0004672
Trre2g00970 701 SUPERFAMILY Protein kinase-like (PK-like) 356 646 IPR011009 -
Trre2g00970 701 Gene3D Transferase(Phosphotransferase) domain 1 450 653 - -
Trre2g00970 701 SMART serkin_6 375 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00970 701 FunFam PR5-like receptor kinase 450 657 - -
Trre2g00970 701 Pfam Protein kinase domain 378 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00970 701 ProSiteProfiles Protein kinase domain profile. 375 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00970 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Trre2g00970 701 Gene3D Phosphorylase Kinase; domain 1 353 449 - -
Trre2g00970 701 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00970 Trre-Chr2 7698397 7702994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00970 4 680 Receptor kinase-like Gene Family AT1G66910 33.805 3.06e-117 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00970 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00970 - - tpra:123893257 979.163