Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00968 ATGTGCAGAGAAAAATCATTGTTATGCTTCCTCCAAATTATTGTTGTTGTGTTACTACTGCATCATAATCATCATCAAACATGTGATGCAACAAATACTAATAACCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAAATATACAACATCCCTTTCGACTTAACGATGATCCAACAACCTGCGGTGATCTGAGATATGAGTTATCCTGCGAAAATAATATGACAGTGTTAACTCTTTTTTCCGGTAAATACTATGTGAAATCAATCAACTACAACAACTACACAATTCGGTTAGTTGATCCTGGAATTGAAGAAGGTGATTGCTCTTCTATTCCTCGCTATTACTTATACGCTTCTAATTTCACAAGTTATTACAATTACCTGGAGGAGGATCCATATGAAAACAAACAACAGCACAAAACATTTGATGATATCTATATGCAGTTACCAATGTTCCAGCATGTAATCTACATGAATTGTAGCAATCCTGTACGAGATAACCCAGTGTACGCGGATACAGCTTCTTGCATCAAGTCGAATTCCCAAGGTACTGGTCATTTATATGCCATTGCTGGGGATTTGAAGGTTGGTAACTTGACAGATGTTGACTGCCATGTCGAGTTTGTTACTGCGATATCTTTCTTCAGTTATAATTACAGCTTTAATGATTGGGATATTCCGAATGAAAAGTATTCGTACAGCGAAATTCATAGGATGTTGGTGGGTGGATTTGATGTTTCTTGGATGAGTGCTGCTTGTCAAAATCTCTGTGGAGTCCGAGATTGCTATTTAAGTGAAACCACGTTGGGATTTCACCTCAGTTGTGATGAACGTCCATCAACACTGCTAATGTTCGTTGAAGGACTACTGCAAGCTATAGGTGTGGAAGGAAACGGTGGTACATCTGAACTTGGTAGTGACATAGGAAATATCATTGGAAGGTATATTTTTCCATTATACATTATATTTAGGTTTTTGTTGGGTTTCATAGTTTTCATTGCAAAATTGGTACATATATATCGAACAAGGCATACATCAATGTATGAAAATATCGAAGATTTTCTTCAAGGGAATTCTCTCATTCCTATAAGGTATTCATACAAAGATATAAAGAAGATGACTAGAGGCTTTAAGAACAAGCTAGGTGAAGGAGGCTATGGTAAAGTATATAAGGGAAAGCTGCGCAGCGGGCCTTTGGTAGCCGTAAAGATGTTGGGCAAATCTAAGGGTAACCAAAATGGACAAGATTTCGTTAATGAAGTTGCAACTATAGGAAGAATACATCACACCAATGTGGTACAACTTGTTGGATTTTGTGTTGAGGGATCAAAACGTGCTCTTGTTTATGATTTCATGCCCAATGGCTCTCTTGATAAATATATTTCCTCTAGAGAAGATCATATTCCCTTAACTTATAAACAATTGTACGAGATATCTCTTGCAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAACCCCATAACATACTTCTTGACAAGGACTTCGTTGCCAAAGTTTCGGACTTTGGTCTTGCAAAACTTTATCCTGTTGACAATAGCATTGTACCTTTGACTGGTGCAAGAGGAACGATTGGTTATATGGCTCCAGAGTTGTTCTACAAAAACATTGGTGGAGTTTCCTATAAGGCCGATGTATATAGTTTTGGAATGCTTTTAATGGAAATAGCAAACAGGAGAAGAAATTTGAACTCAAATGCAGACGATTCAAGCCAAATTTTCTTTCCCTATTGGATTTACAACGAATTGATTGATGAAAGGGAGATTGAAATATTGGGAGAAGCTACCGACGAGGAAAAGAAAAATGTGAAGAAAATGTTCATAATTGCTCTATGGTGTATACAATTGAACCCCAATAATCGTCCTTCGATGGACAAAGTAATAGAAATGCTCGAAGGAGCAATTGAAGACATTGAAATTCCTCCAAAACCTTCTCCCTATGCAAATGAAATTGTTTATGATAATGGAATTAGCTCTAGTGAATCTTTATCGGATGATAACACCGGCTCGATTAGTTTTCTTGGGGAAACTATATAG 2094 0.3701 MCREKSLLCFLQIIVVVLLLHHNHHQTCDATNTNNQTYCPPSSCGKITNIQHPFRLNDDPTTCGDLRYELSCENNMTVLTLFSGKYYVKSINYNNYTIRLVDPGIEEGDCSSIPRYYLYASNFTSYYNYLEEDPYENKQQHKTFDDIYMQLPMFQHVIYMNCSNPVRDNPVYADTASCIKSNSQGTGHLYAIAGDLKVGNLTDVDCHVEFVTAISFFSYNYSFNDWDIPNEKYSYSEIHRMLVGGFDVSWMSAACQNLCGVRDCYLSETTLGFHLSCDERPSTLLMFVEGLLQAIGVEGNGGTSELGSDIGNIIGRYIFPLYIIFRFLLGFIVFIAKLVHIYRTRHTSMYENIEDFLQGNSLIPIRYSYKDIKKMTRGFKNKLGEGGYGKVYKGKLRSGPLVAVKMLGKSKGNQNGQDFVNEVATIGRIHHTNVVQLVGFCVEGSKRALVYDFMPNGSLDKYISSREDHIPLTYKQLYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFVAKVSDFGLAKLYPVDNSIVPLTGARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADDSSQIFFPYWIYNELIDEREIEILGEATDEEKKNVKKMFIIALWCIQLNPNNRPSMDKVIEMLEGAIEDIEIPPKPSPYANEIVYDNGISSSESLSDDNTGSISFLGETI 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00968 697 Gene3D Phosphorylase Kinase; domain 1 357 453 - -
Trre2g00968 697 PANTHER RUST RESISTANCE KINASE LR10-RELATED 350 668 IPR045874 GO:0004672
Trre2g00968 697 ProSiteProfiles Protein kinase domain profile. 377 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00968 697 SMART serkin_6 377 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00968 697 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Trre2g00968 697 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Trre2g00968 697 Gene3D Transferase(Phosphotransferase) domain 1 454 660 - -
Trre2g00968 697 FunFam serine/threonine-protein kinase PBS1-like 345 453 - -
Trre2g00968 697 FunFam PR5-like receptor kinase 454 662 - -
Trre2g00968 697 Pfam Protein tyrosine and serine/threonine kinase 379 650 IPR001245 GO:0004672|GO:0006468
Trre2g00968 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Trre2g00968 697 SUPERFAMILY Protein kinase-like (PK-like) 367 678 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00968 Trre-Chr2 7688773 7694721 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00968 27 664 Receptor kinase-like Gene Family AT5G38260 34.308 1.04e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00968 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00968 - - mtr:25482268 1060.83