Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00966 ATGAGCAGAGGAATGGAATTATCATTCTTATGCTTCCTCCAAATTGTTATTGTTATTGTTTTGATACTACTGCATCATAATCATCAAACATGTGATGCAATTAGTAATAACCAAACATATTGTCCACCTTCTTCATGTGGCAAAATCACAGACATAAAACATCCGTTTCGACTTAAGGGTGATCCAACAGCCTGCGGTGATCAGCGATACGAGTTATCCTGCGAAAACAACATCACAACATTAGTTCTGTTTTCGGGTAAATATTATGTGAAATCAATCGACTACAAAAACTACACAATTCGGTTAGTTGATCCTGGAATTGAAGAAGGTGATTGCTCTACGATTCCTCGCTATTACTTATACGCTTCTAATTTTACCGACTCTTACAATTATAGCTACAAGGAGGGTCCATTTCAAACCTCACAGTACAGAATAATTTCTAGAAAGATTGATGATCCTTCTCCTACTTTGTCAATACCAATGTTCCAGCATGTAATATACATGAATTGTAGCAATCATATACGAGATGATGATCCGGTGTATGTGGATACAGCTTCTTGCATCAACGGTGGACATTTATATGCCATCGCTGGGGATGTGAAGGTCGGAAACTTGACAGATGATGACTGTCATGTGGAGATTATTACAGCAATATCTTTTTTCGGTTATAATTACAGCTCCGAGGATTGGGATATTCCGAATGAAAAATTTTCATACAGCGATATTCATAGGATGTTGGTGGGTGGATTTGAGGTATCTTGGATGAGTGCTCCTTGTCAAGATCATTGTGGACAACCAGATTGTTATTGGAGTGAAATCACTTCGAGTCTTCGATGCGACTCTGAACCATGTAAAACTACATTGAGATTTGCAGTTGGCTGTGAACCTCAATCAAAGCTGCGAATGTTTGTCGAAGGCATTATGTACGGAATTGCTAAAGGACTGCTACAAACAATTGGTGTAGCAATACACGGTGGATCTTTCGGTATTTCTGAATCTAAACTTGGGATTGACATAGGAAAAATCATTGGAATGCATACATCAATGTATGAAAATATTGAAGACTTTCTTCAAGGAAACTCCCTCGTGCCAATAAGGTATTCATACAAAGAAATAAAGAAGATGACTAGAGGTTTTAAGGACAAATTGGGTGAAGGAGGATATGGTAAGGTTTATAAGGGAATGCTTCGCAGTGGCCCTTTGGTAGCCATAAAAATGTTGGGAAAACTTAAAGGTAAAGGAAATGGGGAGGATTTCATCAATGAAGTTGCAACTATAGGAAGAATACATCACACCAATGTGGTGCGACTTAGTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTTTATGATTTCATGCCCAATGGCTCTCTTGATAAATACATTTCCTCTACAGAAGAACATGTTTCCTTAACTTATAAACAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCCCATAACATACTTCTTGACGAGGATTTAATCGCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCTGTTGACAATAGTATTGTAACTTTGACTGGTGTAAGAGGAACATTTGGTTATATGGCTCCAGAATTATTCTACAAAAATATTGGCAAAGTTTCTTATAAGGCTGATGTATATAGTTTTGGAATGCTTTTAATGGAAATAGCAAACAGGAGAAGAAATTTGAACTCAAATGCTGATGAATCAAACCAAATTTTCTTTCCCTATTGGATTTACAATGAACTGATTGAAGCAAGGGAGATAGAAATATTGGGAGAAGCTACCGATGAGGAAAAGAAAAATGTGAAGAAGATTATCATAATTGCTTTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCGATGGACAGAGTAATAAAAATGCTCGAAGGAGATACCGAAAACATTGAAATTCCTCCAAAACCTCCAAATCCAACTGAAATCATTCAAGATAATGGTAGCTCTAGTGAATCTGTTTCAGGTGATAATGTTACTGGCTCAATTAGTTTTTCCTGA 2079 0.3699 MSRGMELSFLCFLQIVIVIVLILLHHNHQTCDAISNNQTYCPPSSCGKITDIKHPFRLKGDPTACGDQRYELSCENNITTLVLFSGKYYVKSIDYKNYTIRLVDPGIEEGDCSTIPRYYLYASNFTDSYNYSYKEGPFQTSQYRIISRKIDDPSPTLSIPMFQHVIYMNCSNHIRDDDPVYVDTASCINGGHLYAIAGDVKVGNLTDDDCHVEIITAISFFGYNYSSEDWDIPNEKFSYSDIHRMLVGGFEVSWMSAPCQDHCGQPDCYWSEITSSLRCDSEPCKTTLRFAVGCEPQSKLRMFVEGIMYGIAKGLLQTIGVAIHGGSFGISESKLGIDIGKIIGMHTSMYENIEDFLQGNSLVPIRYSYKEIKKMTRGFKDKLGEGGYGKVYKGMLRSGPLVAIKMLGKLKGKGNGEDFINEVATIGRIHHTNVVRLSGFCVEGSKRALVYDFMPNGSLDKYISSTEEHVSLTYKQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDEDLIAKVSDFGLAKLYPVDNSIVTLTGVRGTFGYMAPELFYKNIGKVSYKADVYSFGMLLMEIANRRRNLNSNADESNQIFFPYWIYNELIEAREIEILGEATDEEKKNVKKIIIIALWCIQLNPNDRPSMDRVIKMLEGDTENIEIPPKPPNPTEIIQDNGSSSESVSGDNVTGSISFS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00966 692 FunFam serine/threonine-protein kinase PBS1-like 346 453 - -
Trre2g00966 692 Gene3D Transferase(Phosphotransferase) domain 1 454 659 - -
Trre2g00966 692 Pfam Protein kinase domain 380 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00966 692 MobiDBLite consensus disorder prediction 668 692 - -
Trre2g00966 692 SMART serkin_6 377 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00966 692 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Trre2g00966 692 SUPERFAMILY Protein kinase-like (PK-like) 362 651 IPR011009 -
Trre2g00966 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 350 671 IPR045874 GO:0004672
Trre2g00966 692 ProSiteProfiles Protein kinase domain profile. 377 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00966 692 Gene3D Phosphorylase Kinase; domain 1 356 453 - -
Trre2g00966 692 MobiDBLite consensus disorder prediction 655 692 - -
Trre2g00966 692 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Trre2g00966 692 FunFam PR5-like receptor kinase 454 662 - -
Trre2g00966 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00966 Trre-Chr2 7682947 7685735 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00966 1 682 Receptor kinase-like Gene Family AT1G66910 32.230 6.12e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00966 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00966 - - mtr:25482268 1016.14