Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00964 ATGTGCAGAGAAAAATCCTTGTCCTCCTCTATGGAATCATTTATGGTAATTGTTGTTCTACTACTAGTACTGCATCAACATCATCAAATATGTTATGCAAGTACTAATAACCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAAACATAAAACACCCTTTTCGACTTAAAGATGATCCAACTACCTGTGGTGATCCGAGATATGAGTTATCCTGCGAAAACAACATGACAGTGTTAACTCTATTTTCGGGTAAATACTATGTGAAATCAATCAACTACGAAAACTACACAATTCGGCTAGTTGATCCTGGAATTGAAGAAAGTGATTGCTCCTCTATTCCTCGCTATTACTTATACACTTCTAATTTCACAAGTTATTACGATTACCTGGTGGAGGATCCATATGAATACAAACAACAGCACAGAATATTTGATGGTATCTATGTGCAGTTACCAATGTTCCAGCACGTAATATATATGAATTGTAGCAAACTTGTACGAGATAACCCAGTGTACGCGGATACAGCTTCTTGCATCAAGCCGAATTCCCAAGGTGGTCATTTTTATGCCATTGCTGGGGATTTGAAGGTTAGTAACTTAAAAGATGTTGACTGCCATGTCGAGTTTGTTACCGCGATATCTTTCTTCAGTTATAATTACAGCTATTACAACTTTGATGATGATTGGATCATTCCGAATGAAAAGTATTTGTACAGTGAAATTCATAGGATGTTGGTGGGTGGATTTGATGTTTCTTGGATGAGTGTTCCTTGTCAAAATCTCTGTGGAGCCCGACATTGCTATTTAAGTGAAATCACAGGGAGTCTTAAATGCAACAATCCTGCTGATCAATGTATAACCACGTTGGGATTTCACGTTGGTTGTGATGGTGGAACTCCATCAAAGCTGCGTATGTTCATCGAAGGTATTATGTACGGCATTGCTAGAGGACTACTACATGCAATAGGGGTGAGAATATACGATGGATCTGAAGGTATACCCGAATCTCAAGTTGGTATTGACATAGGAAAAATCATCGGAAGGCATACATCAATGTATGAAAATATCGAAGATTTTCTTCAAGGGAATTCTCTCATTCCTATAAGGTATTCATACAAAGATATAAAGAAGATGACTAGAGGCTTTAAGGACAAGCTAGGTGAAGGAGGCTATGGTAAAGTATATAAGGGAAAGCTGCGCAGTGGGCCTTTGGTAGCCGTAAAGATGTTGGGCAAATCTAAGGGTAACCAAAATGGACAAGATTTCGTTAATGAAGTTGCAACTATAGGAAGAATACATCACATGAATGTCGTACGACTTGTTGGATTTTGTGTTGAGGGATCAAAACGTGCTCTTATTTATGATTTCATGTCCAATGGCTCTCTTGATAAATATATTTCCTCTAGAGAAGATCATATTCCCTTAACTTATAAACAATTGTACGAGATATCGCTTGCGGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCCCATAACATACTTCTTGACAAGGACTTCATCGCTAAAGTTTCGGACTTTGGTCTTGCAAAACTTTATCCTGTTGACAATAGCATTGTAACTTTGACTGCTGCAAGAGGAACGATAGGTTATATGGCTCCAGAATTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAGGCCGATGTATATAGTTTTGGAATGCTCTTGATGGAAATAGCTAACAGGAGAAGAAATTTGAACTCAAATGCAGACAACTCAAGCCAAATTTTCTTTCCCTATTGGATTTACAACGAATTAATTGAAGAAAGGGAGATTGAAATATTGGGAGAAGCTACTGACGAGGAAAAGAAAAATGTCAAGAAAATGTTCATAGTTGCTTTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCGATGGACAAAGTATTAGAAATGCTTGAAGGAACAACTGAAGATATTGAAATTCCTCCAAAACCTTCTCCGTATCCAAATGAAATTGTTCAAGATAATGGAATTAACTATAGTGAATCTGTATCGGATGATGATGTCACTGGCTCGATTAGTTTTCATGGGGAAACTATAGAAGATCCTTTATTATAA 2127 0.3728 MCREKSLSSSMESFMVIVVLLLVLHQHHQICYASTNNQTYCPPSSCGKITNIKHPFRLKDDPTTCGDPRYELSCENNMTVLTLFSGKYYVKSINYENYTIRLVDPGIEESDCSSIPRYYLYTSNFTSYYDYLVEDPYEYKQQHRIFDGIYVQLPMFQHVIYMNCSKLVRDNPVYADTASCIKPNSQGGHFYAIAGDLKVSNLKDVDCHVEFVTAISFFSYNYSYYNFDDDWIIPNEKYLYSEIHRMLVGGFDVSWMSVPCQNLCGARHCYLSEITGSLKCNNPADQCITTLGFHVGCDGGTPSKLRMFIEGIMYGIARGLLHAIGVRIYDGSEGIPESQVGIDIGKIIGRHTSMYENIEDFLQGNSLIPIRYSYKDIKKMTRGFKDKLGEGGYGKVYKGKLRSGPLVAVKMLGKSKGNQNGQDFVNEVATIGRIHHMNVVRLVGFCVEGSKRALIYDFMSNGSLDKYISSREDHIPLTYKQLYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLAKLYPVDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADNSSQIFFPYWIYNELIEEREIEILGEATDEEKKNVKKMFIVALWCIQLNPNDRPSMDKVLEMLEGTTEDIEIPPKPSPYPNEIVQDNGINYSESVSDDDVTGSISFHGETIEDPLL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00964 708 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Trre2g00964 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Trre2g00964 708 SUPERFAMILY Protein kinase-like (PK-like) 372 679 IPR011009 -
Trre2g00964 708 Gene3D Phosphorylase Kinase; domain 1 362 458 - -
Trre2g00964 708 SMART serkin_6 382 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00964 708 FunFam serine/threonine-protein kinase PBS1-like 351 458 - -
Trre2g00964 708 ProSiteProfiles Protein kinase domain profile. 382 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00964 708 PANTHER RUST RESISTANCE KINASE LR10-RELATED 355 672 IPR045874 GO:0004672
Trre2g00964 708 FunFam PR5-like receptor kinase 459 667 - -
Trre2g00964 708 Pfam Protein kinase domain 385 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00964 708 Gene3D Transferase(Phosphotransferase) domain 1 459 665 - -
Trre2g00964 708 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00964 Trre-Chr2 7673583 7676485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00964 371 678 Receptor kinase-like Gene Family AT5G38280 49.840 7.42e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00964 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00964 - - mtr:25482268 1070.84