Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00962 ATGTGCAGAGAAAAATCATTCTTATGTTTCCTCCAAATTATGATTTTTGTGCTACTACTGCATCATAATCATCATCAAACATGTGATGCAACAAATAGTAAAAACAAAACTTGTCCCTCTTCTTCATGTGGCAAAATCAGCAACATAAAATATCCGTTTCGACTTAAGAATGACCCAACAACCTGTGGCGATCCGAGGTATGAGTTATCTTGCGAAAACAACAAAACAATGTTAACTTTGTCTTCGGGTAAATACTATGTGAAATCAATCAACTACAATAACTACACAATTCGGTTAGTTGATCCCGGAATCCAAGAGTCTGATTGCTCCTCCATTCCTCGGTATTTCTTAACAACATCCAATTTCACAAGTTCTTATGATGATGACTACTTCGCAGATCCATATCAAACCTTCCAAAAAAAACTACCGGAAGGTGGAACATTACCGTTGTTCCAGCACATAGTTTACATGAATTGTAGCAATCCTATAGGGGATGATCCCGCGTACGCGGATACAGCTTCTTGCATCAAGCTAAATTCCCAAGGTGGCTATGTTTATGCCATTACCGGGGATTTGACGGTTGGAAACTTGAAACATGATGACTGCCACGTCAAGGTTGTTACCGCGATATCTTTTTTCGGTTATAATCGTAGTGGAGTTGAACCATGTAATTTCTATCAAAAGTATTCGTACAGTGAAATTCATAGGATGTTGGTGGATGGATTTGAGGTTTCTTGGATCAGTAGTGCTTGTGAAGATTTTTGTAAAGATGAATCAAACCCATATTGCTATTTGGAAGTAACCACTGGGAGTCTTCATTGCAACGATCATGGTGATTTCTGTGTAACAACAATGGGATTTCATGTTGGTTGTGGAACCCATTCAAAGCTGCGAATGTTTGTCGAAGGTACTATGTTTGGCATTGCCAAAGGATTTCTACAAGCTTTTGGTGCGACAATATACGATGGATCAAGAGGCATTTCTGAATCTATACATGGAATTGACATAGGAACAATCATTGGAAAGTATATTTTGTCACCATACATTTTAGTGAGACTTATGTTGGGTCTTGTAGTTTTCTTTGCAAAGTTGATACATATATATCGAACAAGGCATACATCGATGTATGAAAATATTGAAGATTTTCTTCAAGGGAACTCCCTGATGCCAATAAGGTATTCATACAAAGAGATAAAGAACATGACTAGAGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGTAAGGTTTATAAGGGAAAGCTACGTAGTGGCCCTTTGGTAGCCATAAAGATGTTGGGTAAATCTAAGGGCAATGGACAAGATTTCATTAGTGAAGTTGCAACCATAGGAAAAATACATCACACCAATGTGGTGCAACTTATTGGATTTTGTGTTGAGGGTTCAAAGCGTGCTCTTGTTTATGATTTCATGCCCAATAGCTCCCTTGATAAATACATTTCCTCCGGAGAAGATCATATTTCCTTAACTTATAAACAAATGTACGACATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGACATCAAGCCCCATAACATACTTCTTGACAAGGATTTTATCGCCAAGGTTTCAGACTTTGGTCTTGCAAAACTATATCCTGTTGACAATAGCATTGTAACATTGACTGCTGCAAGAGGAACGATTGGTTATATGGCTCCAGAATTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAGGCTGATGTATATAGTTTTGGAATGCTCTTAATGGAAATAGCAAACAGGAGAAGAAATTTGAACTCAAATGCAGATGATTCAAGCCAAATTTTCTTTCCCTATTGGATTTACAATGAATTGATTGAAGAAAGGGAGATAGAAATATTGGGAGAAGTTACTGATGAGGATAAGAAAAATGTGAAGAAAATGTTCATAGTTGCTCTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCAATGGACAGAGTAATAGAAATGCTCGAAGGAGATACTAAAGACATTGAAATTCCTCCAAAACCTTCTCCATATCCAACTGAAATTATTCAAGATCATGTAACTAGTTCTAGTGAATCTGTATCGAATGATGATGCAACTGGCTCAATTAGTTTTCGTGAGGAAACTATAGAAGTTCCTTTACTATAG 2184 0.3723 MCREKSFLCFLQIMIFVLLLHHNHHQTCDATNSKNKTCPSSSCGKISNIKYPFRLKNDPTTCGDPRYELSCENNKTMLTLSSGKYYVKSINYNNYTIRLVDPGIQESDCSSIPRYFLTTSNFTSSYDDDYFADPYQTFQKKLPEGGTLPLFQHIVYMNCSNPIGDDPAYADTASCIKLNSQGGYVYAITGDLTVGNLKHDDCHVKVVTAISFFGYNRSGVEPCNFYQKYSYSEIHRMLVDGFEVSWISSACEDFCKDESNPYCYLEVTTGSLHCNDHGDFCVTTMGFHVGCGTHSKLRMFVEGTMFGIAKGFLQAFGATIYDGSRGISESIHGIDIGTIIGKYILSPYILVRLMLGLVVFFAKLIHIYRTRHTSMYENIEDFLQGNSLMPIRYSYKEIKNMTRGFKDKLGEGGYGKVYKGKLRSGPLVAIKMLGKSKGNGQDFISEVATIGKIHHTNVVQLIGFCVEGSKRALVYDFMPNSSLDKYISSGEDHISLTYKQMYDISLGVARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLAKLYPVDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADDSSQIFFPYWIYNELIEEREIEILGEVTDEDKKNVKKMFIVALWCIQLNPNDRPSMDRVIEMLEGDTKDIEIPPKPSPYPTEIIQDHVTSSSESVSNDDATGSISFREETIEVPLL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00962 727 Gene3D Transferase(Phosphotransferase) domain 1 478 686 - -
Trre2g00962 727 Gene3D Phosphorylase Kinase; domain 1 380 477 - -
Trre2g00962 727 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524
Trre2g00962 727 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Trre2g00962 727 ProSiteProfiles Protein kinase domain profile. 403 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00962 727 SUPERFAMILY Protein kinase-like (PK-like) 388 675 IPR011009 -
Trre2g00962 727 PANTHER RUST RESISTANCE KINASE LR10-RELATED 376 696 IPR045874 GO:0004672
Trre2g00962 727 SMART serkin_6 403 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00962 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Trre2g00962 727 FunFam PR5-like receptor kinase 478 686 - -
Trre2g00962 727 Pfam Protein kinase domain 406 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00962 727 FunFam serine/threonine-protein kinase PBS1-like 371 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00962 Trre-Chr2 7655031 7657590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00962 30 688 Receptor kinase-like Gene Family AT5G38260 33.982 3.40e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g00962 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00962 - - mtr:25482268 1093.18