Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00946 ATGGAAAGAGTTGTTGGAGGAAAGTATAGAATTGGTCGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTGCACATGTTGTGACTTCTGAGCTTGTTGCCATTAAGAAGGAGAGCAAGAAAACCAAACAACCACAACTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTCGAAGACCTCCTTTACTACTGTGGTGGGAAGTTTTCGCTAAAATCAGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAGTTCTTACATTCGAAGGGATTACTGCATAGAGATATCAAACCAGATAACTTCCTCATGGGTCTTGGGAAGAAAGCAACTCAGGTTTGCATGATTGATTTTGGACTTTCAAAAGGATATAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACAGCACGTTATGCAAGTTGCAATACTCATAAAGGAATTGAGCAAAGTCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTTCCAGCTGCCACCAGAATGCAAAAATATGAAAAGATTTGCGATATGAAGTTATCAATTCGTGTTGAGGTACTTTGCAAGTCATATCCCGTGGAGTTTGCATCTTACTTTCATTATTGCCGCTCCTTGACATTTGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGAGGCTGACTATTTATACGACTGGACAATTTTAAAATATCAGGAGATTCAAAAGGCAAAGGCACAAAATCTATCAATTGCTCCACTTGCTGTGCCTACCAGTCTTGAGCCAGCGGATGTGGATGAGCATACAGAAGTCGATGATTGTACTCAAAATGCTGTGGCAAAACCAACAATCTGTACCGATCGTCCGCGTGTTTGTATGAAGCTCAGGGTGGCAAATGTTGAAAATCCGGATCTTGATGATGAGATTGAAACAGATAAACAGAATGTGAATACTGGTTTACCTATTTCCACTGTCACGCCTATAGTCTCTACAGAAAATGTCGCAAAACCCGAAAGCACTGTAGAAGTCTCAAACCCGGATGGCGTGTTAGGGAGTAAATGCGGTGTCTCAGGTGATGTTGTTCCTTCACTACGCCGAGTTTCATCCATCAATTAG 1287 0.404 MERVVGGKYRIGRKIGSGSFGEIYIGAHVVTSELVAIKKESKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLEDLLYYCGGKFSLKSVLMLADQMLTRIEFLHSKGLLHRDIKPDNFLMGLGKKATQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLPAATRMQKYEKICDMKLSIRVEVLCKSYPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYEADYLYDWTILKYQEIQKAKAQNLSIAPLAVPTSLEPADVDEHTEVDDCTQNAVAKPTICTDRPRVCMKLRVANVENPDLDDEIETDKQNVNTGLPISTVTPIVSTENVAKPESTVEVSNPDGVLGSKCGVSGDVVPSLRRVSSIN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00946 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Trre2g00946 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre2g00946 428 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00946 428 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Trre2g00946 428 Pfam Protein kinase domain 9 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00946 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre2g00946 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00946 428 FunFam CK1 family protein kinase 1 324 - -
Trre2g00946 428 PANTHER CASEIN KINASE-RELATED 7 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00946 Trre-Chr2 7489226 7493648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00946 9 213 EF-hand Containing Proteins AT5G66210 28.302 1.61e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre2g00946 Pkinase 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00946 K08960 - gmx:100782913 588.571