Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00944 ATGGCCAAAATTGCGTTAGGAACAAGCCAAGAGGACACTAAGCCTGATTGCATTCAAGCTCTAATTGTTGAATTCATTGTAACCTTTCTCTATGTCTTTGCTGGTGTTGGTTTTGCAATGGCTGCTCATAAGTTAAGTGAAGATGCACTAATGGCATTACTTTTTGTGGCTGTGGCACATGCTCTTTTGGTGGCTGTAATGATTTCCGCCGGCCACATTTCGGGCGGCCATTTGAATCCCTCTGTGACCTTGGGACTCCTTGTCGGAGGCCACATCACAATTGTTCGCGCCATCTTATATTGGATTGACCAATTAATAGCATCCGCAACAGCTTGCTATCTTCTTCATTATCTTACTAGTGGATTGCCAATTCCAACTCATACACTTGCAAGTGGAATAGGATATACTCAAGGTGTGGTTTGGGAGATTGTGTTGACATTCTCTTTGTTGTTCACTGTTTATGCAACCATGGTTGATCCAAAGAAAGGAGCACTTTCTGGGCTTGGCCCACTTTTGATTGGGTTTGTGGTAGGGGCTAATATCATGGTTGGTGGGGCTTTCTCAGCTGCTTCAACGAACCCGGCAAGATCATTTGGGCCTGCTTTGGTTAGTGGAAATTGGACTAATCATTGGGTTTATTGGGTTGGGCCTTTTATTGGTGGTGGGCTTGCTGGTTTCATTTATGAGAATTTTTTCATTAATAGAGATCATGTTCCTCTGGTCGTAGATGAAGAAAGCTACTAA 744 0.4341 MAKIALGTSQEDTKPDCIQALIVEFIVTFLYVFAGVGFAMAAHKLSEDALMALLFVAVAHALLVAVMISAGHISGGHLNPSVTLGLLVGGHITIVRAILYWIDQLIASATACYLLHYLTSGLPIPTHTLASGIGYTQGVVWEIVLTFSLLFTVYATMVDPKKGALSGLGPLLIGFVVGANIMVGGAFSAASTNPARSFGPALVSGNWTNHWVYWVGPFIGGGLAGFIYENFFINRDHVPLVVDEESY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00944 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 Pfam Major intrinsic protein 14 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Trre2g00944 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Trre2g00944 247 SUPERFAMILY Aquaporin-like 13 240 IPR023271 -
Trre2g00944 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g00944 247 PANTHER AQUAPORIN-8 4 235 IPR034294 -
Trre2g00944 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00944 Trre-Chr2 7483565 7484895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00944 1 245 Major Intrinsic Protein MIP AT2G25810 73.878 1.62e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00944 K09873 - gmx:100811447 385.185