Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00941 ATGAGAGTTTCATCACAATATTCAGAAACCGAGAGTACCTCAAATTCATCACCACCAACATCACCATGTACAACAAACTCAATTCAAGACCAAGAATCCAACATAAACAACAACAAGAATCTTAAACGCAACCGCGACTCGAACAAACACCACGTCTACCGAGGTGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCTGAAATCCGTGAGCCTCGTAAGAAATCACGGATTTGGCTCGGCACTTTCCCCACAGCTGAAATGGCTGCCAGAGCGCACGATGCAGCTGCGCTCTGTGTTAAAGGAAAAACCGCCATTCTCAATTTCCCTCACCTGGCATCCTCTCTTCCAAAACCCGCTTCTTTAGCGCCTCGCGATGTTCAAGCCGCGGCAACTAAAGCAGCTCAAATGGACTTCAAATTAGAATCACCGTCATCTTCTTCTTCATTTACATCGTTGTCATCGATGACATCATCAATAACATCAATCACATCATCAACAAGTCTATTAATGAAAACAGCGACAACGCTGTCTTCATCAGCAGACTTGTCAAATACTTCGGAAGAACTTAGCGAGATTATTGAACTACCTACTTTGGAAAATGTTTATGATGATGTTGGAAAAGAGGAGTTTTTGTTTGTTGATTCACAATCACAAGACTATGCTTGGATGTATCAGCAACCAATGACATGGCTACATACAACACAAGAAGATGGTTCTTGTTGTGGTGATGATGGTGTTGTAACTAGTTTCGAGAGTTTTCTATGGAATTACTAG 774 0.4225 MRVSSQYSETESTSNSSPPTSPCTTNSIQDQESNINNNKNLKRNRDSNKHHVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKTAILNFPHLASSLPKPASLAPRDVQAAATKAAQMDFKLESPSSSSSFTSLSSMTSSITSITSSTSLLMKTATTLSSSADLSNTSEELSEIIELPTLENVYDDVGKEEFLFVDSQSQDYAWMYQQPMTWLHTTQEDGSCCGDDGVVTSFESFLWNY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00941 257 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 201 - -
Trre2g00941 257 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 MobiDBLite consensus disorder prediction 1 32 - -
Trre2g00941 257 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Trre2g00941 257 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Trre2g00941 257 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Trre2g00941 257 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00941 Trre-Chr2 7428555 7429328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00941 25 237 AP2-EREBP Transcription Factor Family AT5G11590 53.670 6.89e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g00941 AP2 9.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00941 K09286 - gmx:100305349 234.572