Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00937 ATGGAAGGAACAACCAACATTTTCCAAACCACATTTTGCCCACAACTACCTTCCGACGACGAAAACAATGGCGTCAAGGCCAATAATGCGATCGCCGAACAATTCATTGTTGAGGACCTTCTTAATCTTAACAATGACGTTGACGATGCTACTATCATTTCTGATACCAACCTTGACTCTGCCACCGGCAACTCAACTGCCTCATCCTCCACCGCAACGATTGTCAATAGTGTCAGCTCGCCATCATTGTCCGGGTGCGACCCCAATCTCGTTCCTGATATTGGCTGCCATTTCTCCGGAGACTTGTGTGTTCCGGATGATGATTTAGCAGAGCTGGAATGGCTTTCGAATATTGTGGAGGAATCGTTTTCAAACGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCAAAACAAGGATGAAGGGCCCCGTGAGTTTTCCCAGCTCAACCGAAACAATCCGATATTCAACAAAGAAGTTTCGGTTCCAGCTAAGGCTCGTAGCAAGAGGACTCGCGGGCCCCCATGTGACTGGAGTTCACGTCTTCTTGTATTGTCTCAAACGACTCCGCCTTTTTCTGAGTCAGAGGAAATCCTTATTCCCACTCCGACCTTACCTTCTGTCACTATTCCAAAGAAGCAACCGAAGACAACTCCAAGAAGAAAGGACAATAATGACGGAGGGTCAGGCGGAGATGGACGTAGGTGCTTGCATTGCATGACGGATAAGACGCCGCAATGGAGAACGGGGCCTAAGGGTCCGAAGACATTATGCAATGCGTGCGGTGTAAGATATAAGTCGGGGCGGTTGGTGCCTGAATACAGGCCTGCAGCGAGCCCAACATTTGTGTTGACCAAACACTCCAACTCACACCGTAAAGTGTTAGAGCTACGGAGGCAGAAGGAAATGTTGCAGGCCCACCAACACCAACAGAACCAATTCTTACAACATCAAAATATGATGTTTGATATGTCAAATGGTGAAGATTATTTGATTCACCAACATGTGGGACCCGATTTTAGGCAGATGATGCAGTAG 1047 0.4737 MEGTTNIFQTTFCPQLPSDDENNGVKANNAIAEQFIVEDLLNLNNDVDDATIISDTNLDSATGNSTASSSTATIVNSVSSPSLSGCDPNLVPDIGCHFSGDLCVPDDDLAELEWLSNIVEESFSNEDLQKMQLISGMKVQNKDEGPREFSQLNRNNPIFNKEVSVPAKARSKRTRGPPCDWSSRLLVLSQTTPPFSESEEILIPTPTLPSVTIPKKQPKTTPRRKDNNDGGSGGDGRRCLHCMTDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLQAHQHQQNQFLQHQNMMFDMSNGEDYLIHQHVGPDFRQMMQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00937 348 PIRSF Txn_fac_GATA_plant 17 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre2g00937 348 PANTHER GATA TRANSCRIPTION FACTOR 36 315 - -
Trre2g00937 348 Gene3D - 232 315 IPR013088 GO:0006355|GO:0008270
Trre2g00937 348 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Trre2g00937 348 MobiDBLite consensus disorder prediction 196 240 - -
Trre2g00937 348 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Trre2g00937 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Trre2g00937 348 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Trre2g00937 348 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Trre2g00937 348 FunFam GATA transcription factor 228 316 - -
Trre2g00937 348 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00937 Trre-Chr2 7376074 7377780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00937 35 347 C2C2-Gata Transcription Factor Family AT5G25830 51.952 1.12e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g00937 GATA 3.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00937 - - psat:127091887 464.536